C
Charles Girardot
Researcher at European Bioinformatics Institute
Publications - 33
Citations - 2691
Charles Girardot is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Enhancer & Transcription factor. The author has an hindex of 18, co-authored 31 publications receiving 2364 citations.
Papers
More filters
Journal ArticleDOI
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.
Stefan Bonn,Robert P. Zinzen,Charles Girardot,E. Hilary Gustafson,Alexis Perez-Gonzalez,Nicolas Delhomme,Yad Ghavi-Helm,Bartek Wilczyński,Andrew Riddell,Eileen E. M. Furlong +9 more
TL;DR: This new approach to obtain cell type–specific information on chromatin state and RNA polymerase II (Pol II) occupancy within the multicellular Drosophila melanogaster embryo identifies dynamic enhancer usage, an essential step in deciphering developmental networks.
Journal ArticleDOI
Combinatorial binding predicts spatio-temporal cis -regulatory activity
TL;DR: A novel approach to predict spatio-temporal cis-regulatory activity based only on in vivo transcription factor binding and enhancer activity data is used, generating a high-resolution atlas of cis-Regulatory modules describing their temporal and combinatorial occupancy during Drosophila mesoderm development.
Journal ArticleDOI
A core transcriptional network for early mesoderm development in Drosophila melanogaster
Thomas Sandmann,Charles Girardot,Marc Brehme,Waraporn Tongprasit,Viktor Stolc,Eileen E. M. Furlong +5 more
TL;DR: It is suggested that Twist binds to almost all mesodermal CRMs to provide the competence to integrate inputs from more specialized transcription factors, and extensive combinatorial binding, feed-forward regulation, and complex logical outputs as prevalent features are revealed.
Journal ArticleDOI
A Transcription Factor Collective Defines Cardiac Cell Fate and Reflects Lineage History
Guillaume Junion,Mikhail Spivakov,Charles Girardot,Martina Braun,E. Hilary Gustafson,Ewan Birney,Eileen E. M. Furlong +6 more
TL;DR: It is demonstrated that the five genetic components essential for cardiac specification in Drosophila, including the effectors of Wg and Dpp signaling, act as a collective unit to cooperatively regulate heart enhancer activity, both in vivo and in–vitro.
Journal ArticleDOI
Dynamic Regulation by Polycomb Group Protein Complexes Controls Pattern Formation and the Cell Cycle in Drosophila
Katarzyna Oktaba,Luis Gutiérrez,Julien Gagneur,Charles Girardot,Aditya K. Sengupta,Eileen E. M. Furlong,Jürg Müller +6 more
TL;DR: In this article, genome-wide binding profiles of PhoRC, the Drosophila PcG protein complex containing the DNA-binding factor Pho/dYY1 and dSfmbt were reported.