D
Daniel Dalevi
Researcher at Chalmers University of Technology
Publications - 26
Citations - 11821
Daniel Dalevi is an academic researcher from Chalmers University of Technology. The author has contributed to research in topics: Markov model & Variable-order Markov model. The author has an hindex of 14, co-authored 25 publications receiving 10571 citations. Previous affiliations of Daniel Dalevi include Joint Genome Institute & AstraZeneca.
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Journal ArticleDOI
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
Todd Z. DeSantis,Philip Hugenholtz,Neils Larsen,Mark Rojas,Eoin L. Brodie,Keith Keller,Thomas Huber,Daniel Dalevi,Ping Hu,Gary L. Andersen +9 more
TL;DR: A 16S rRNA gene database (http://greengenes.lbl.gov) was used to provide chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies as mentioned in this paper.
Journal ArticleDOI
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.
Falk Warnecke,Peter Luginbuhl,Natalia Ivanova,Majid Ghassemian,Toby Richardson,Toby Richardson,Justin T. Stege,Michelle H. Cayouette,Alice C. McHardy,Gordana Djordjevic,Nahla Aboushadi,Rotem Sorek,Susannah G. Tringe,Mircea Podar,Hector Garcia Martin,Victor Kunin,Daniel Dalevi,Julita Madejska,Edward Kirton,Darren Platt,Ernest Szeto,Asaf Salamov,Kerrie Barry,Natalia Mikhailova,Nikos C. Kyrpides,Eric G. Matson,Elizabeth A. Ottesen,Xinning Zhang,Myriam Hernandez,Catalina Patricia Morales Murillo,Luis G. Acosta,Isidore Rigoutsos,Giselle Tamayo,Brian D. Green,Cathy Chang,Edward M. Rubin,Eric J. Mathur,Eric J. Mathur,Dan E. Robertson,Philip Hugenholtz,Jared R. Leadbetter +40 more
TL;DR: In this article, a metagenomic analysis of the bacterial community resident in the hindgut paunch of a wood-feeding Nasutitermes species (which do not contain cellulose-fermenting protozoa) was performed to show the presence of a large, diverse set of bacterial genes for cellulose and xylan hydrolysis.
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IMG/M: a data management and analysis system for metagenomes
Victor M. Markowitz,Natalia Ivanova,Ernest Szeto,Krishna Palaniappan,Ken Chu,Daniel Dalevi,I-Min A. Chen,Yuri Grechkin,Inna Dubchak,Iain Anderson,Athanasios Lykidis,Konstantinos Mavromatis,Philip Hugenholtz,Nikos C. Kyrpides +13 more
TL;DR: IMG/M as mentioned in this paper is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI).
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ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
TL;DR: The package contains tools for importing, annotating and visualizing metagenomic data produced by shotgun high-throughput sequencing, and develops and implements a novel approach based on a Poisson model for functional comparison of metagenomes.
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Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting
TL;DR: A set of new algorithms and software tools for automatic protein identification using peptide mass fingerprinting is presented, designed to operate without human intervention and contain several novel approaches.