E
Ernest Szeto
Researcher at Lawrence Berkeley National Laboratory
Publications - 61
Citations - 9289
Ernest Szeto is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 33, co-authored 61 publications receiving 8683 citations. Previous affiliations of Ernest Szeto include Joint Genome Institute & Los Alamos National Laboratory.
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IMG: the integrated microbial genomes database and comparative analysis system
Victor M. Markowitz,I-Min A. Chen,Krishna Palaniappan,Ken Chu,Ernest Szeto,Yuri Grechkin,Anna Ratner,Biju Jacob,Jinghua Huang,Peter L. Williams,Marcel Huntemann,Iain Anderson,Konstantinos Mavromatis,Natalia Ivanova,Nikos C. Kyrpides +14 more
TL;DR: The Integrated Microbial Genomes system serves as a community resource for comparative analysis of publicly available genomes in a comprehensive integrated context and provides tools and viewers for analyzing and reviewing the annotations of genes and genomes inA comparative context.
Journal ArticleDOI
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.
Falk Warnecke,Peter Luginbuhl,Natalia Ivanova,Majid Ghassemian,Toby Richardson,Toby Richardson,Justin T. Stege,Michelle H. Cayouette,Alice C. McHardy,Gordana Djordjevic,Nahla Aboushadi,Rotem Sorek,Susannah G. Tringe,Mircea Podar,Hector Garcia Martin,Victor Kunin,Daniel Dalevi,Julita Madejska,Edward Kirton,Darren Platt,Ernest Szeto,Asaf Salamov,Kerrie Barry,Natalia Mikhailova,Nikos C. Kyrpides,Eric G. Matson,Elizabeth A. Ottesen,Xinning Zhang,Myriam Hernandez,Catalina Patricia Morales Murillo,Luis G. Acosta,Isidore Rigoutsos,Giselle Tamayo,Brian D. Green,Cathy Chang,Edward M. Rubin,Eric J. Mathur,Eric J. Mathur,Dan E. Robertson,Philip Hugenholtz,Jared R. Leadbetter +40 more
TL;DR: In this article, a metagenomic analysis of the bacterial community resident in the hindgut paunch of a wood-feeding Nasutitermes species (which do not contain cellulose-fermenting protozoa) was performed to show the presence of a large, diverse set of bacterial genes for cellulose and xylan hydrolysis.
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Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
Hector Garcia Martin,Natalia Ivanova,Victor Kunin,Falk Warnecke,Kerrie Barry,Alice C. McHardy,Christine Yeates,Shaomei He,Asaf Salamov,Ernest Szeto,Eileen Dalin,Nik Putnam,Harris Shapiro,Jasmyn Pangilinan,Isidore Rigoutsos,Nikos C. Kyrpides,Linda L. Blackall,Katherine D. McMahon,Philip Hugenholtz +18 more
TL;DR: A metagenomic analysis of two lab-scale EBPR sludges dominated by the uncultured bacterium, “Candidatus Accumulibacter phosphatis,” sheds light on several controversies in EBPR metabolic models and provides hypotheses explaining the dominance of A. phosphatis.
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Dissecting biological “dark matter” with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
Yann Marcy,Cleber C. Ouverney,Elisabeth M. Bik,Elisabeth M. Bik,Tina Lösekann,Tina Lösekann,Natalia Ivanova,Hector Garcia Martin,Ernest Szeto,Darren Platt,Philip Hugenholtz,David A. Relman,David A. Relman,Stephen R. Quake +13 more
TL;DR: A microfluidic device that allows the isolation and genome amplification of individual microbial cells, thereby enabling organism-level genomic analysis of complex microbial ecosystems without the need for culture, is developed.
Journal ArticleDOI
IMG 4 version of the integrated microbial genomes comparative analysis system
Victor M. Markowitz,I-Min A. Chen,Krishna Palaniappan,Ken Chu,Ernest Szeto,Manoj Pillay,Anna Ratner,Jinghua Huang,Tanja Woyke,Marcel Huntemann,Iain Anderson,Konstantinos Billis,Neha Varghese,Konstantinos Mavromatis,Amrita Pati,Natalia Ivanova,Nikos C. Kyrpides +16 more
TL;DR: Since the last report published in the 2012 NAR Database Issue, IMG’s annotation and data integration pipelines have evolved while new tools have been added for recording and analyzing single cell genomes, RNA Seq and biosynthetic cluster data.