D
Daniel McDonald
Researcher at University of California, San Diego
Publications - 157
Citations - 84726
Daniel McDonald is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Microbiome & Biology. The author has an hindex of 46, co-authored 128 publications receiving 64433 citations. Previous affiliations of Daniel McDonald include University of Colorado Boulder & University of California, Berkeley.
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Journal ArticleDOI
Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity.
Robert C. Kaplan,Robert C. Kaplan,Zheng Wang,Mykhaylo Usyk,Daniela Sotres-Alvarez,Martha L. Daviglus,Neil Schneiderman,Gregory A. Talavera,Marc D. Gellman,Bharat Thyagarajan,Jee-Young Moon,Yoshiki Vázquez-Baeza,Daniel McDonald,Jessica Williams-Nguyen,Michael C. Wu,Kari E. North,Justin P. Shaffer,Christopher C. Sollecito,Qibin Qi,Carmen R. Isasi,Tao Wang,Rob Knight,Robert D. Burk +22 more
TL;DR: In this paper, an error was reported in the third paragraph in the section “Analysis of GMB composition and its correlates” (page 3 of the PDF), where the first sentence of the text should refer to Table 2, but mistakenly refers to Table 1.
Journal ArticleDOI
Reference Data Based Insights Expand Understanding of Human Metabolomes
Julia M. Gauglitz,Wout Bittremieux,Candace L. Williams,Kelly C. Weldon,Morgan Panitchpakdi,Francesca Di Ottavio,Christine M. Aceves,Elizabeth Brown,Nicole Sikora,Alan K. Jarmusch,Cameron Martino,Anupriya Tripathi,Erfan Sayyari,Justin P. Shaffer,Roxana Coras,Fernando Vargas,Lindsay DeRight Goldasich,Tara Schwartz,MacKenzie Bryant,Gregory Humphrey,Abigail J. Johnson,Katharina Spengler,Pedro Belda-Ferre,Edgar Diaz,Daniel McDonald,Qiyun Zhu,Dominic S. Nguyen,Emmanuel O. Elijah,Mingxun Wang,Clarisse Marotz,Kate E. Sprecher,Daniela Vargas-Robles,Dana Withrow,Gail Ackermann,Lourdes Herrera,Barry J. Bradford,Lucas Miranda Marques,Juliano Geraldo Amaral,Rodrigo Moreira da Silva,Flávio Protaso Veras,Thiago M. Cunha,Renê Donizeti Ribeiro de Oliveira,Paulo Louzada-Junior,Robert H. Mills,Douglas Galasko,Parambir S. Dulai,Curt Wittenberg,David Gonzalez,Robert Terkeltaub,Megan M. Doty,Jae H. Kim,Kyung E. Rhee,Julia Beauchamp-Walters,Kenneth P. Wright,Maria Gloria Dominguez Bello,Mark J. Manary,Michelli F. Oliveira,Brigid S. Boland,Norberto Peporine Lopes,Monica Guma,Austin D. Swafford,Rachel J. Dutton,Rob Knight,Pieter C. Dorrestein +63 more
TL;DR: It is discovered that food-based annotations increase the interpreted fraction of molecular features 7-fold, providing a general framework for expanding the interpretability of human metabolomic “dark matter.”
Posted ContentDOI
Reproductive resilience but not root architecture underpin yield improvement in maize
Carlos D. Messina,Mark E. Cooper,Daniel McDonald,Hanna Poffenbarger,Randy Clark,Andrea Salinas,Yinan Fang,Carla Gho,Tom Tang,Geoff Graham +9 more
TL;DR: It is shown that both root architecture and yield have changed with decades of maize breeding, but not the water capture, which is consistent with Darwinian agriculture theory.
Posted ContentDOI
Consistent, comprehensive and computationally efficient OTU definitions
Jai Ram Rideout,Jai Ram Rideout,Yan He,Jose A. Navas-Molina,William A. Walters,Luke K. Ursell,Sean M. Gibbons,Sean M. Gibbons,John Chase,Daniel McDonald,Antonio Gonzalez,Adam Robbins-Pianka,Jose C. Clemente,Jack A. Gilbert,Jack A. Gilbert,Susan M. Huse,Hongwei Zhou,Rob Knight,Rob Knight,J. Gregory Caporaso +19 more
Journal ArticleDOI
Applications and Comparison of Dimensionality Reduction Methods for Microbiome Data
George Armstrong,Gibraan Rahman,Cameron Martino,Daniel McDonald,Antonio Gonzalez,Gal Mishne,Rob Knight +6 more
TL;DR: The need for further development in the field is described, in particular combining the power of phylogenetic analysis with the ability to handle sparsity, compositionality, and non-normality, as well as discussing current techniques that should be applied more widely in future analyses.