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Deepak Unni
Researcher at Lawrence Berkeley National Laboratory
Publications - 23
Citations - 2771
Deepak Unni is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Computer science & Genome. The author has an hindex of 9, co-authored 16 publications receiving 807 citations. Previous affiliations of Deepak Unni include University of Missouri.
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Journal ArticleDOI
The Gene Ontology resource: enriching a GOld mine
Seth Carbon,Eric Douglass,Benjamin M. Good,Deepak Unni,Nomi L. Harris,Christopher J. Mungall,Siddartha Basu,Rex L. Chisholm,Robert J. Dodson,Eric Hartline,Petra Fey,Paul Thomas,Laurent-Philippe Albou,Dustin Ebert,Michael J Kesling,Huaiyu Mi,Anushya Muruganujan,Xiaosong Huang,Tremayne Mushayahama,Sandra A. LaBonte,Deborah A. Siegele,Giulia Antonazzo,Helen Attrill,Nicholas H. Brown,Phani V. Garapati,Steven J Marygold,Vítor Trovisco,Gil dos Santos,Kathleen Falls,Christopher J. Tabone,Pinglei Zhou,Joshua L. Goodman,Victor B. Strelets,Jim Thurmond,Penelope Garmiri,Rizwan Ishtiaq,Milagros Rodríguez-López,Marcio Luis Acencio,Martin Kuiper,Astrid Lægreid,Colin Logie,Ruth C. Lovering,Barbara Kramarz,Shirin C C Saverimuttu,Sandra M Pinheiro,Heather Gunn,Renzhi Su,Katherine E Thurlow,Marcus C. Chibucos,Michelle G. Giglio,Suvarna Nadendla,James B. Munro,Rebecca C. Jackson,Margaret Duesbury,Noemi del-Toro,Birgit H M Meldal,Kalpana Paneerselvam,Livia Perfetto,Pablo Porras,Sandra Orchard,Anjali Shrivastava,Hsin-Yu Chang,Robert D. Finn,Alex L. Mitchell,Neil D. Rawlings,Lorna Richardson,Amaia Sangrador-Vegas,Judith A. Blake,Karen R. Christie,Mary E. Dolan,Harold J. Drabkin,David P. Hill,Li Ni,D. Sitnikov,Midori A. Harris,Stephen G. Oliver,Kim Rutherford,Valerie Wood,Jaqueline Hayles,Jürg Bähler,Elizabeth R Bolton,Jeffery L De Pons,Melinda R. Dwinell,G. Thomas Hayman,Mary L. Kaldunski,Anne E. Kwitek,Stanley J. F. Laulederkind,Cody Plasterer,Marek Tutaj,Mahima Vedi,Shur-Jen Wang,Peter D'Eustachio,Lisa Matthews,James P. Balhoff,Suzi Aleksander,Michael J Alexander,J. Michael Cherry,Stacia R. Engel,Felix Gondwe,Kalpana Karra,Stuart R. Miyasato,Robert S. Nash,Matt Simison,Marek S. Skrzypek,Shuai Weng,Edith D. Wong,Marc Feuermann,Pascale Gaudet,Anne Morgat,Erica Bakker,Tanya Z. Berardini,Leonore Reiser,Shabari Subramaniam,Eva Huala,Cecilia N. Arighi,Andrea H. Auchincloss,Kristian B. Axelsen,Ghislaine Argoud-Puy,Alex Bateman,Marie-Claude Blatter,Emmanuel Boutet,Emily H. Bowler,Lionel Breuza,Alan Bridge,Ramona Britto,Hema Bye-A-Jee,Cristina Casals Casas,Elisabeth Coudert,Paul Denny,Anne Estreicher,Maria Livia Famiglietti,George Georghiou,Arnaud Gos,Nadine Gruaz-Gumowski,Emma Hatton-Ellis,Chantal Hulo,Alexandr Ignatchenko,Florence Jungo,Kati Laiho,Philippe Le Mercier,Damien Lieberherr,Antonia Lock,Yvonne Lussi,Alistair MacDougall,Michele Magrane,Maria Jesus Martin,Patrick Masson,Darren A. Natale,Nevila Hyka-Nouspikel,Ivo Pedruzzi,Lucille Pourcel,Sylvain Poux,Sangya Pundir,Catherine Rivoire,Elena Speretta,Shyamala Sundaram,Nidhi Tyagi,Kate Warner,Rossana Zaru,Cathy H. Wu,Alexander D. Diehl,Juancarlos Chan,Christian A. Grove,Raymond Lee,Hans-Michael Müller,Daniela Raciti,Kimberly Van Auken,Paul W. Sternberg,Matthew Berriman,Michael Paulini,Kevin L. Howe,Sibyl Gao,Adam Wright,Lincoln Stein,Douglas G. Howe,Sabrina Toro,Monte Westerfield,Pankaj Jaiswal,Laurel Cooper,Justin Elser +179 more
TL;DR: A historical archive covering the past 15 years of GO data with a consistent format and file structure for both the ontology and annotations is made available to maintain consistency with other ontologies.
Journal ArticleDOI
How many rare diseases are there
Melissa A. Haendel,Nicole Vasilevsky,Deepak Unni,Cristian Bologa,Nomi L. Harris,Heidi L. Rehm,Ada Hamosh,Gareth Baynam,Tudor Groza,Julie A. McMurry,Hugh Dawkins,Ana Rath,Courtney Thaxon,Giovanni Bocci,Marcin P. Joachimiak,Sebastian Köhler,Peter N. Robinson,Christopher J. Mungall,Tudor I. Oprea +18 more
TL;DR: A lack of robust knowledge of the number of rare diseases and thenumber of people affected by them limits the development of approaches to ameliorate the substantial cumulative burden of rare disease.
Journal ArticleDOI
Apollo: Democratizing genome annotation
Nathan Dunn,Deepak Unni,Colin Diesh,Monica Munoz-Torres,Nomi L. Harris,Eric Yao,Helena Rasche,Ian Holmes,Christine G. Elsik,Suzanna E. Lewis +9 more
TL;DR: Apollo as discussed by the authors is an open source software package that enables researchers to efficiently inspect and refine the precise structure and role of genomic features in a graphical browser-based platform, allowing distributed users to simultaneously edit the same encoded features while also instantly seeing the updates made by other researchers on the same region.
Journal ArticleDOI
Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine
Christine G. Elsik,Aditi Tayal,Colin Diesh,Deepak Unni,Marianne L. Emery,Hung N. Nguyen,Darren E. Hagen +6 more
TL;DR: An update of the HGD, a model organism database for insect species of the order Hymenoptera (ants, bees and wasps), which maintains genomic data for 9 bee species, 10 ant species and 1 wasp, including the versions of genome and annotation data sets published by the genome sequencing consortiums and those provided by NCBI.
Journal ArticleDOI
Bovine Genome Database: new tools for gleaning function from the Bos taurus genome
Christine G. Elsik,Deepak Unni,Colin Diesh,Aditi Tayal,Marianne L. Emery,Hung N. Nguyen,Darren E. Hagen +6 more
TL;DR: BovineMine, based on the InterMine data warehousing system, is developed, to integrate the bovine genome, annotation, QTL, SNP and expression data with external sources of orthology, gene ontology, Gene interaction and pathway information.