H
Helena Rasche
Researcher at University of Freiburg
Publications - 18
Citations - 3081
Helena Rasche is an academic researcher from University of Freiburg. The author has contributed to research in topics: Computer science & Genome project. The author has an hindex of 6, co-authored 15 publications receiving 1676 citations. Previous affiliations of Helena Rasche include Avans University of Applied Sciences & Texas A&M University.
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Journal ArticleDOI
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
Enis Afgan,Dannon Baker,Bérénice Batut,Marius van den Beek,Dave Bouvier,Martin Čech,John Chilton,Dave Clements,Nate Coraor,Björn Grüning,Aysam Guerler,Jennifer Hillman-Jackson,Saskia Hiltemann,Vahid Jalili,Helena Rasche,Nicola Soranzo,Jeremy Goecks,James Taylor,Anton Nekrutenko,Daniel Blankenberg +19 more
TL;DR: Improvements to Galaxy's core framework, user interface, tools, and training materials enable Galaxy to be used for analyzing tens of thousands of datasets, and >5500 tools are now available from the Galaxy ToolShed.
Journal ArticleDOI
Apollo: Democratizing genome annotation
Nathan Dunn,Deepak Unni,Colin Diesh,Monica Munoz-Torres,Nomi L. Harris,Eric Yao,Helena Rasche,Ian Holmes,Christine G. Elsik,Suzanna E. Lewis +9 more
TL;DR: Apollo as discussed by the authors is an open source software package that enables researchers to efficiently inspect and refine the precise structure and role of genomic features in a graphical browser-based platform, allowing distributed users to simultaneously edit the same encoded features while also instantly seeing the updates made by other researchers on the same region.
Journal ArticleDOI
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Enis Afgan,Anton Nekrutenko,Björn Grüning,Daniel Blankenberg,Jeremy Goecks,Michael C. Schatz,Alexander E. Ostrovsky,Alexandru Mahmoud,Andrew Lonie,Anna Syme,Anne Fouilloux,Anthony Bretaudeau,Anup Kumar,Arthur C. Eschenlauer,Assunta D. Desanto,Aysam Guerler,Beatriz Serrano-Solano,Bérénice Batut,Bradley W. Langhorst,Bridget Carr,Bryan Raubenolt,Cameron J. Hyde,Catherine J. Bromhead,Christopher B. Barnett,Coline Royaux,Cristóbal L. García Gallardo,Daniel Fornika,Dannon Baker,Dave Bouvier,Dave Clements,David A. de Lima Morais,David Lopez Tabernero,Delphine Larivière,E. Nasr,Federico Zambelli,Florian Heyl,Fotis Psomopoulos,Frederik Coppens,Gareth Price,Gianmauro Cuccuru,Gildas Le Corguillé,Gregory Von Kuster,Gulsum Gudukbay,Helena Rasche,Hans-Rudolf Hotz,Ignacio Eguinoa,Igor V. Makunin,Isuru Ranawaka,James Taylor,Jayadev Joshi,Jennifer Hillman-Jackson,John Chilton,Kaivan Kamali,Keith Suderman,Krzysztof Poterlowicz,Yvan Le Bras,Lucille Lopez-Delisle,Luke Sargent,Madeline E. Bassetti,M. A. Tangaro,Marius Van Den Beek,Martin Čech,Matthias Bernt,Matthias Fahrner,Mehmet Tekman,Melanie Föll,Michael R. Crusoe,Miguel Angel Roncoroni,N. K. Kucher,Nathaniel Coraor,Nicholas Stoler,Nick Rhodes,Nicola Soranzo,Niko Pinter,Nuwan Goonasekera,Pablo Moreno,Pavankumar Videm,Petera Melanie,Pietro Mandreoli,Pratik D. Jagtap,Qiang Gu,Ralf J. M. Weber,Ross Lazarus,Ruben H.P. Vorderman,Saskia Hiltemann,Sergey Golitsynskiy,Shilpa Garg,Simon Bray,Simon Gladman,Simone Leo,Subina Mehta,Timothy J. Griffin,Vahid Jalili,Yves Vandenbrouck,Vi-Kwei Wen,Vijaykrishna Nagampalli,W. Bacon,W. L. De Koning,Wolf-Martin Maier,P. J. Briggs +99 more
TL;DR: Key Galaxy technical developments include an improved user interface for launching large-scale analyses with many files, interactive tools for exploratory data analysis, and a complete suite of machine learning tools.
Journal ArticleDOI
Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation
Jolene Ramsey,Helena Rasche,Cory Maughmer,Anthony Criscione,Eleni M. Mijalis,Mei Liu,James C. Hu,Ry Young,Jason J. Gill +8 more
TL;DR: A suite of phage-oriented tools housed in open, user-friendly web-based interfaces and a multi-purpose platform that enables researchers to easily and accurately annotate an entire phage genome are developed.
Journal ArticleDOI
Galactic Circos: User-friendly Circos plots within the Galaxy platform
Helena Rasche,Saskia Hiltemann +1 more
TL;DR: A Galaxy wrapper for Circos is developed, thus combining the power ofcircos with the accessibility and ease of use of the Galaxy platform, and substantially simplifies the specification and configuration of Circos plots for end users while retaining the power to produce publication-quality visualizations of complex multidimensional datasets.