D
Denis Fellmann
Researcher at Scripps Research Institute
Publications - 17
Citations - 2877
Denis Fellmann is an academic researcher from Scripps Research Institute. The author has contributed to research in topics: Data acquisition & Modular design. The author has an hindex of 11, co-authored 17 publications receiving 2562 citations.
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Journal ArticleDOI
Automated molecular microscopy: the new Leginon system.
Christian Suloway,James Pulokas,Denis Fellmann,Anchi Cheng,Francisco Guerra,Joel Quispe,Scott M. Stagg,Clinton S. Potter,Bridget Carragher +8 more
TL;DR: The primary automated data acquisition software system, Leginon, has been completely redesigned over the past two years and the system has demonstrated the capacity for high throughput data acquisition by acquiring images of more than 100,000 particles in a single session at the microscope.
Journal ArticleDOI
Appion: an integrated, database-driven pipeline to facilitate EM image processing.
Gabriel C. Lander,Scott M. Stagg,Neil R. Voss,Anchi Cheng,Denis Fellmann,James Pulokas,Craig Yoshioka,Christopher Irving,Anke M. Mulder,Pick-Wei Lau,Dmitry Lyumkis,Clinton S. Potter,Bridget Carragher +12 more
TL;DR: The vision for this technique is to provide a straightforward manner in which users can proceed from raw data to a reliable 3D reconstruction through a pipeline that both facilitates management of the processing steps and makes the results at each step more transparent.
Journal ArticleDOI
Automatic particle selection: Results of a comparative study
Yuanxin Zhu,Bridget Carragher,Robert M. Glaeser,Denis Fellmann,Chandrajit L. Bajaj,Marshall Bern,Fabrice Mouche,Felix de Haas,Richard Hall,David J. Kriegman,Steven J. Ludtke,Satya P. Mallick,Pawel A. Penczek,Alan M. Roseman,Fred J. Sigworth,Niels Volkmann,Clinton S. Potter +16 more
TL;DR: A particle selection "bakeoff" was included in the program of the Multidisciplinary Workshop on Automatic Particle Selection for cryoEM, and it was agreed that establishing benchmark particles and using bakeoffs to evaluate algorithms are useful in promoting algorithm development for fully automated particle selection.
Journal ArticleDOI
Automated cryoEM data acquisition and analysis of 284742 particles of GroEL.
Scott M. Stagg,Gabriel C. Lander,James Pulokas,Denis Fellmann,Anchi Cheng,Joel Quispe,Satya P. Mallick,Satya P. Mallick,Radomir M. Avila,Bridget Carragher,Clinton S. Potter +10 more
TL;DR: The potential of the Leginon system for high-throughput data acquisition is demonstrated by describing an experiment in which more than 280,000 particles of GroEL are acquired in a single 25 h session at the microscope and the resolution of the reconstructed 3D density maps improves with decreasing ice thickness.
Journal ArticleDOI
An improved holey carbon film for cryo-electron microscopy.
Joel Quispe,John Damiano,Stephen E. Mick,David P. Nackashi,Denis Fellmann,Teddy G. Ajero,Bridget Carragher,Clinton S. Potter +7 more
TL;DR: An improved holey carbon film has been developed that uses a hard template and a water-soluble release layer to replicate the template pattern into the carbon films and has a dramatic improvement on the distribution of single particles embedded in vitreous ice suspended across the holes.