J
Jeremy A. Frank
Researcher at Norwegian University of Life Sciences
Publications - 15
Citations - 2105
Jeremy A. Frank is an academic researcher from Norwegian University of Life Sciences. The author has contributed to research in topics: Genome & Metagenomics. The author has an hindex of 13, co-authored 15 publications receiving 1732 citations. Previous affiliations of Jeremy A. Frank include University of Copenhagen & San Diego State University.
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Journal ArticleDOI
Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes
Jeremy A. Frank,Claudia I. Reich,Shobha Sharma,Jon S. Weisbaum,Jon S. Weisbaum,Brenda A. Wilson,Gary J. Olsen +6 more
TL;DR: This work proposes a formulation for a forward primer (27f) that includes three sequences not usually present that is better at maintaining the original rRNA gene ratio of Lactobacillus spp.
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Heterogeneity of Vaginal Microbial Communities within Individuals
Tae Kyung Kim,Susan M. Thomas,Mengfei Ho,Shobha Sharma,Claudia I. Reich,Jeremy A. Frank,Kathleen M. Yeater,Diana R. Biggs,Noriko Nakamura,Rebecca M. Stumpf,Steven R. Leigh,Richard I. Tapping,Steven R. Blanke,James M. Slauch,H. Rex Gaskins,Jon S. Weisbaum,Jon S. Weisbaum,Gary J. Olsen,Lois L. Hoyer,Brenda A. Wilson +19 more
TL;DR: The data reveal that the vaginal microbiota is not homogenous throughout the vaginal tract but differs significantly within an individual with regard to anatomical site and sampling method used, and calls for the consideration of microenvironments when sampling vaginal microbiota as a clinical predictor of vaginal health.
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Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction Studies
Li Guo,Kim Brügger,Chao Liu,Shiraz A. Shah,Huajun Zheng,Yongqiang Zhu,Shengyue Wang,Reidun K Lillestol,Lanming Chen,Jeremy A. Frank,David Prangishvili,Lars Paulin,Qunxin She,Li Huang,Roger A. Garrett +14 more
TL;DR: The genomes of two Sulfolobus islandicus strains obtained from Icelandic solfataras were sequenced and analyzed, revealing complex and diverse immune systems in both strains, consistent with them having been mobilized both intra- and intercellularly.
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Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data.
Jeremy A. Frank,Yao Pan,Ave Tooming-Klunderud,Vincent G. H. Eijsink,Alice C. McHardy,Alexander J. Nederbragt,Phillip B. Pope +6 more
TL;DR: The incorporation of CCS data produced significant enhancements in taxonomic binning and genome reconstruction of two dominant phylotypes, which assembled and binned poorly using HiSeq data alone.
Journal ArticleDOI
Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations
Özgün Candan Onarman Umu,Jeremy A. Frank,Jonatan U. Fangel,Marije Oostindjer,Carol Souza da Silva,Elizabeth J Bolhuis,Guido Bosch,William G.T. Willats,Phillip B. Pope,Dzung B. Diep +9 more
TL;DR: Investigation of the gut microbiome of growing pigs responds to diets containing gel-forming alginate and fermentable resistant starch finds functional redundancy is seemingly apparent with respect to the microbiome’s capacity to degrade starch and other dietary polysaccharides, one of the key stages in digestion.