J
Joachim Kopka
Researcher at Max Planck Society
Publications - 263
Citations - 30808
Joachim Kopka is an academic researcher from Max Planck Society. The author has contributed to research in topics: Metabolome & Metabolomics. The author has an hindex of 78, co-authored 254 publications receiving 27052 citations. Previous affiliations of Joachim Kopka include University of Münster & Michigan State University.
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Journal ArticleDOI
Proposed minimum reporting standards for chemical analysis
Lloyd W. Sumner,Alexander Amberg,Dave Barrett,Michael H. Beale,Richard D. Beger,Clare A. Daykin,Teresa W.-M. Fan,Oliver Fiehn,Royston Goodacre,Julian L. Griffin,Thomas Hankemeier,Nigel Hardy,James M. Harnly,Richard M. Higashi,Joachim Kopka,Andrew N. Lane,John C. Lindon,Philip J. Marriott,Andrew W. Nicholls,Michael D. Reily,John J. Thaden,Mark R. Viant +21 more
TL;DR: This article proposes the minimum reporting standards related to the chemical analysis aspects of metabolomics experiments including: sample preparation, experimental analysis, quality control, metabolite identification, and data pre-processing.
Journal ArticleDOI
Metabolite profiling for plant functional genomics.
Oliver Fiehn,Joachim Kopka,Peter Dörmann,Thomas Altmann,Richard N. Trethewey,Lothar Willmitzer +5 more
TL;DR: The use of metabolite profiling is described as a new tool for a comparative display of gene function and has the potential not only to provide deeper insight into complex regulatory processes but also to determine phenotype directly.
Journal ArticleDOI
Gas chromatography mass spectrometry–based metabolite profiling in plants
TL;DR: A detailed protocol for gas chromatography mass spectrometry (GC-MS)-based metabolite profiling that offers a good balance of sensitivity and reliability, being considerably more sensitive than NMR and more robust than liquid chromatography–linked mass spectromaetry.
Journal ArticleDOI
GMD@CSB.DB: the Golm Metabolome Database
Joachim Kopka,Nicolas Schauer,Stephan Krueger,Claudia Birkemeyer,Björn Usadel,Eveline Bergmüller,Peter Dörmann,Wolfram Weckwerth,Yves Gibon,Mark Stitt,Lothar Willmitzer,Alisdair R. Fernie,Dirk Steinhauser +12 more
TL;DR: GD, The Golm Metabolome Database is presented, an open access metabolome database, which provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools, e.g. with regard to methods, spectral information or compounds.
Journal ArticleDOI
Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry.
TL;DR: Although the method represents a compromise for a wide range of metabolites in terms of extraction, chemical modification and GC-MS analysis, for 25 metabolites analysed in detail the recoveries were found to be within the generally accepted range of 70-140%.