J
João C. Setubal
Researcher at University of São Paulo
Publications - 216
Citations - 13903
João C. Setubal is an academic researcher from University of São Paulo. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 50, co-authored 195 publications receiving 12114 citations. Previous affiliations of João C. Setubal include Virginia Bioinformatics Institute & University of Washington.
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Journal ArticleDOI
Comparative Genomic Analysis of Xanthomonas axonopodis pv. citrumelo F1, Which Causes Citrus Bacterial Spot Disease, and Related Strains Provides Insights into Virulence and Host Specificity
Neha Jalan,Valente Aritua,Dibyendu Kumar,Fahong Yu,Jeffrey B. Jones,James H. Graham,João C. Setubal,Nian Wang +7 more
TL;DR: Comparative genomic analysis showed differences in several gene clusters, like those for type III effectors, the type IV secretion system, lipopolysaccharide synthesis, and others, which provides valuable insights into the mechanism of bacterial virulence and host specificity in X. citrumelo and X. vesicatoria.
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Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios.
Lucas Palma Perez Braga,Lucas Palma Perez Braga,Aymé Spor,Witold Kot,Marie-Christine Breuil,Lars Hestbjerg Hansen,João C. Setubal,Laurent Philippot +7 more
TL;DR: The results show that changes in phage pressure have the potential to impact soil bacterial community composition and diversity, and a positive effect of active phages on the soil ammonium concentration in a few treatments indicates that increased phages pressure may also be important for soil functions.
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Augment or push: a computational study of bipartite matching and unit-capacity flow algorithms
TL;DR: The implementations of the FIFO and lowest-level selection push-relabel algorithms have the most robust asymptotic rate of growth and work best overall and augmenting path algorithms on some problem classes are faster by a moderate constant factor.
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Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with High Transcriptional Activities from the Human Parasite Schistosoma mansoni
Ricardo DeMarco,Andre T. Kowaltowski,Abimael A. Machado,M. Bento Soares,Cybele Gargioni,Toshie Kawano,Vanderlei Rodrigues,Alda Maria Backx Noronha Madeira,R. Alan Wilson,Carlos Frederico Martins Menck,João C. Setubal,Emmanuel Dias-Neto,Luciana C. C. Leite,Sergio Verjovski-Almeida +13 more
TL;DR: A role for these elements in the dynamics of this complex human parasite genome is suggested, suggesting that there are two different populations of retrotransposons in S. mansoni genome, occupying different niches in its ecology.
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Comparative genomics analyses of citrus-associated bacteria
Leandro Marcio Moreira,Robson Francisco de Souza,Nalvo F. Almeida,João C. Setubal,Julio Cezar Franco de Oliveira,Luiz Roberto Furlan,Jesus Aparecido Ferro,Ana C. R. da Silva +7 more
TL;DR: A detailed genomic comparison is presented between XF-9a5a and XAC, which possesses more genes involved with type IV pili biosynthesis than does XAC and has 4 copies of Type I restriction/modification system while XAC has only one.