J
João C. Setubal
Researcher at University of São Paulo
Publications - 216
Citations - 13903
João C. Setubal is an academic researcher from University of São Paulo. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 50, co-authored 195 publications receiving 12114 citations. Previous affiliations of João C. Setubal include Virginia Bioinformatics Institute & University of Washington.
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Journal ArticleDOI
Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa
M. A. Van Sluys,M. C. de Oliveira,Claudia Barros Monteiro-Vitorello,Cristina Yumi Miyaki,Luiz Roberto Furlan,Luis Eduardo Aranha Camargo,A.C.R. da Silva,D. H. Moon,Marco Aurélio Takita,Eliana Gertrudes de Macedo Lemos,Marco Antonio Machado,Maria Inês Tiraboschi Ferro,F. R. da Silva,Maria Helena S. Goldman,Gustavo H. Goldman,Manoel Victor Franco Lemos,Hamza El-Dorry,Siu Mui Tsai,Helaine Carrer,Dirce Maria Carraro,R. C. de Oliveira,Luiz R. Nunes,Walter José Siqueira,Luiz Lehmann Coutinho,Edna Teruko Kimura,Emer S. Ferro,Ricardo Harakava,Eiko E. Kuramae,Celso Luis Marino,E. A. Giglioti,I. L. Abreu,Lucia Maria Carareto Alves,A. M. do Amaral,Gilson S. Baia,S. R. Blanco,Michael dos Santos Brito,Fabiana de Souza Cannavan,A. V. Celestino,A. F. Da Cunha,Roseli C. Fenille,Jesus Aparecido Ferro,Eduardo Fernandes Formighieri,Luciano Takeshi Kishi,S. G. Leoni,A. R. Oliveira,Vicente E. De Rosa,F. T. Sassaki,Janete Apparecida Desidério Sena,A. A. de Souza,Daniela Truffi,Fernando Tsukumo,Giane M. Yanai,Lilian Giotto Zaros,Edwin L. Civerolo,Andrew J. G. Simpson,Nalvo F. Almeida,João C. Setubal,João Paulo Kitajima +57 more
TL;DR: The genome sequence of X. fastidiosa (Temecula strain) is reported and it is concluded that these two organisms have identical metabolic functions and are likely to use a common set of genes in plant colonization and pathogenesis, permitting convergence of functional genomic strategies.
Journal ArticleDOI
Genome Sequence of Azotobacter vinelandii, an Obligate Aerobe Specialized To Support Diverse Anaerobic Metabolic Processes
João C. Setubal,Patricia C. Dos Santos,Barry S. Goldman,Helga Ertesvåg,Guadelupe Espin,Luis M. Rubio,Svein Valla,Nalvo F. Almeida,Divya Balasubramanian,Lindsey Cromes,Leonardo Curatti,Zijin Du,Eric J. Godsy,Brad Goodner,Kaitlyn Hellner-Burris,Jose A. Hernandez,Katherine Houmiel,Juan Imperial,Christina Kennedy,Timothy J. Larson,Phil Latreille,Lauren S. Ligon,Jing Lu,Mali Mærk,Nancy M. Miller,Stacie Norton,Ina P. O'Carroll,Ian T. Paulsen,Estella C. Raulfs,Rebecca Roemer,James M. Rosser,Daniel Segura,Steve Slater,Shawn L. Stricklin,David J. Studholme,Jian Sun,Carlos Juliano M. Viana,Erik Wallin,Baomin Wang,Cathy Wheeler,Huijun Zhu,Dennis R. Dean,Ray Dixon,Derek W. Wood,Derek W. Wood +44 more
TL;DR: The complete genome sequence of A. vinelandii DJ is reported, which identified the chromosomal locations of the genes coding for the three known oxygen-sensitive nitrogenases, as well as genes codes for other oxygen- sensitive enzymes, such as carbon monoxide dehydrogenase and formate dehydrogen enzyme.
Journal ArticleDOI
Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria
Steven C. Slater,Barry S. Goldman,Brad Goodner,João C. Setubal,Stephen K. Farrand,Eugene W. Nester,Thomas J. Burr,Lois M. Banta,Allan W. Dickerman,Ian T. Paulsen,Leon Otten,Garret Suen,Roy D. Welch,Nalvo F. Almeida,Nalvo F. Almeida,Frank Arnold,Oliver T. Burton,Zijin Du,Adam D. Ewing,Eric J. Godsy,Sara E. Heisel,Kathryn L. Houmiel,Kathryn L. Houmiel,Jinal Jhaveri,Jing Lu,Nancy M. Miller,Stacie Norton,Qiang Chen,Waranyoo Phoolcharoen,Victoria Ohlin,Dan Ondrusek,Nicole Pride,Shawn L. Stricklin,Jian Sun,Jian Sun,Cathy Wheeler,Cathy Wheeler,Lindsey Wilson,Huijun Zhu,Derek W. Wood,Derek W. Wood +40 more
TL;DR: Together, these results define the evolution of chromosome architecture and gene content among the Rhizobiaceae and support a generalized mechanism for second-chromosome formation among bacteria.
Journal ArticleDOI
The Candidatus Liberibacter-Host Interface: Insights into Pathogenesis Mechanisms and Disease Control.
Nian Wang,Elizabeth A. Pierson,João C. Setubal,Jin Xu,Julien Levy,Yunzeng Zhang,Jinyun Li,Luiz Thiberio Rangel,Joaquim Martins +8 more
TL;DR: The progress on understanding pathogenesis mechanisms of "Ca. Liberibacter" species and the control approaches for diseases they cause are reviewed and disease management strategies are reviewed, including promising new technologies.
Journal ArticleDOI
The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity.
Rongman Cai,James J. Lewis,Shuangchun Yan,Haijie Liu,Christopher R. Clarke,F. Campanile,Nalvo F. Almeida,Nalvo F. Almeida,Nalvo F. Almeida,David J. Studholme,Magdalen Lindeberg,David J. Schneider,Massimo Zaccardelli,João C. Setubal,João C. Setubal,Nadia P. Morales-Lizcano,Adriana Bernal,Gitta Coaker,Christy Baker,Carol L. Bender,Scotland Leman,Boris A. Vinatzer +21 more
TL;DR: A genome-based micro-evolutionary study of a bacterial plant pathogen, Pseudomonas syringae pv.