M
M. Bento Soares
Researcher at University of Iowa
Publications - 20
Citations - 4251
M. Bento Soares is an academic researcher from University of Iowa. The author has contributed to research in topics: Expressed sequence tag & Gene. The author has an hindex of 18, co-authored 20 publications receiving 4127 citations.
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Journal ArticleDOI
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Robert L. Strausberg,Elise A. Feingold,Lynette H. Grouse,Jeffery G. Derge,Richard D. Klausner,Francis S. Collins,Lukas Wagner,Carolyn M. Shenmen,Gregory D. Schuler,Stephen F. Altschul,Barry R. Zeeberg,Kenneth H. Buetow,Carl F. Schaefer,Narayan K. Bhat,Ralph F. Hopkins,Heather Jordan,Troy Moore,Steve I Max,Jun Wang,Florence Hsieh,Luda Diatchenko,Kate Marusina,Andrew A Farmer,Gerald M. Rubin,Ling Hong,Mark Stapleton,M. Bento Soares,Maria de Fatima Bonaldo,Thomas L. Casavant,Todd E. Scheetz,Michael J. Brownstein,Ted B. Usdin,Shiraki Toshiyuki,Piero Carninci,Christa Prange,Sam S Raha,Naomi A Loquellano,Garrick J Peters,Rick D Abramson,Sara J Mullahy,Stephanie Bosak,Paul J. McEwan,Kevin McKernan,Joel A. Malek,Preethi H. Gunaratne,Stephen Richards,Kim C. Worley,Sarah Hale,Angela M. Garcia,Stephen W. Hulyk,Debbie K Villalon,Donna M. Muzny,Erica Sodergren,Xiuhua Lu,Richard A. Gibbs,Jessica Fahey,Erin Helton,Mark Ketteman,Anuradha Madan,Stephanie Rodrigues,Amy Sanchez,Michelle Whiting,Anup Madan,Alice C. Young,Yuriy O. Shevchenko,Gerard G. Bouffard,Robert W. Blakesley,Jeffrey W. Touchman,Eric D. Green,Mark Dickson,Alex Rodriguez,Jane Grimwood,Jeremy Schmutz,Richard M. Myers,Yaron S.N. Butterfield,Martin Krzywinski,Ursula Skalska,Duane E. Smailus,Angelique Schnerch,Jacqueline E. Schein,Steven J.M. Jones,Marco A. Marra +81 more
TL;DR: The National Institutes of Health Mammalian Gene Collection (MGC) Program is a multiinstitutional effort to identify and sequence a cDNA clone containing a complete ORF for each human and mouse gene.
Journal ArticleDOI
The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)
Daniela S. Gerhard,Lukas Wagner,Elise A. Feingold,Carolyn M. Shenmen,Lynette H. Grouse,Greg Schuler,Steven L. Klein,Susan Old,Rebekah S. Rasooly,Peter J. Good,Mark S. Guyer,Allison M. Peck,Jeffery G. Derge,David J. Lipman,Francis S. Collins,Wonhee Jang,Steven Sherry,Mike Feolo,Leonie Misquitta,Eduardo Lee,Kirill Rotmistrovsky,Susan F. Greenhut,Carl F. Schaefer,Kenneth H. Buetow,Tom I. Bonner,David Haussler,Jim Kent,Mark Diekhans,Terry Furey,Michael R. Brent,Christa Prange,Kirsten Schreiber,Nicole Shapiro,Narayan K. Bhat,Ralph F. Hopkins,Florence Hsie,Tom Driscoll,M. Bento Soares,Maria de Fatima Bonaldo,Thomas L. Casavant,Todd E. Scheetz,Michael J. Brownstein,Ted B. Usdin,Shiraki Toshiyuki,Piero Carninci,Yulan Piao,Dawood B. Dudekula,Minoru S.H. Ko,Koichi Kawakami,Yutaka Suzuki,Sumio Sugano,C. E. Gruber,M. R. Smith,Blake A. Simmons,Troy Moore,Richard C. Waterman,Stephen L. Johnson,Yijun Ruan,Chia-Lin Wei,Sinnakaruppan Mathavan,Preethi H. Gunaratne,Jia Qian Wu,Angela M. Garcia,Stephen W. Hulyk,Edwin Fuh,Ye Yuan,Anna Sneed,Carla Kowis,Anne Hodgson,Donna M. Muzny,John Douglas Mcpherson,Richard A. Gibbs,Jessica Fahey,Jessica Fahey,Erin Helton,Mark Ketteman,Anuradha Madan,Anuradha Madan,Stephanie Rodrigues,Stephanie Rodrigues,Amy Sanchez,Michelle Whiting,Anup Madan,Anup Madan,Alice C. Young,Keith Wetherby,Steven J. Granite,Peggy N. Kwong,Charles P. Brinkley,Russell L. Pearson,Gerard G. Bouffard,Robert W. Blakesly,Eric D. Green,Mark Dickson,Alex Rodriguez,Jane Grimwood,Jeremy Schmutz,Richard M. Myers,Yaron S.N. Butterfield,Malachi Griffith,Obi L. Griffith,Martin Krzywinski,Nancy Y. Liao,Ryan Morrin,Diana L. Palmquist,Anca Petrescu,Ursula Skalska,Duane E. Smailus,Jeff M. Stott,Angelique Schnerch,Jacqueline E. Schein,Steven J.M. Jones,Robert A. Holt,Agnes Baross,Marco A. Marra,Sandra W. Clifton,Kathryn A. Makowski,Stephanie Bosak,Joel A. Malek +118 more
TL;DR: Comparison of the sequence of the MGC clones to reference genome sequences reveals that most cDNA clones are of very high sequence quality, although it is likely that some cDNAs may carry missense variants as a consequence of experimental artifact, such as PCR, cloning, or reverse transcriptase errors.
Journal ArticleDOI
Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni
Sergio Verjovski-Almeida,Ricardo DeMarco,Elizabeth A. L. Martins,Pedro Edson Moreira Guimarães,Elida B. Ojopi,Apuã C.M. Paquola,João Paulo Piazza,Milton Y. Nishiyama,João Paulo Kitajima,Rachel Adamson,Peter D. Ashton,Maria de Fatima Bonaldo,Patricia S. Coulson,Gary P. Dillon,Leonardo P. Farias,Sheila P. Gregório,Paulo L. Ho,Ricardo A. Leite,L. Cosme C. Malaquias,Regina C.P. Marques,Patricia A. Miyasato,Ana L. T. O. Nascimento,Fernanda Pires Ohlweiler,Eduardo M. Reis,Marcela A. Ribeiro,Renata G. Sá,Gaëlle C. Stukart,M. Bento Soares,Cybele Gargioni,Toshie Kawano,Vanderlei Rodrigues,Alda Maria Backx Noronha Madeira,R. Alan Wilson,Carlos Frederico Martins Menck,João C. Setubal,Luciana C. C. Leite,Emmanuel Dias-Neto +36 more
TL;DR: By analyzing automated Gene Ontology assignments, this work provides a detailed view of important S. mansoni biological systems, including characterization of metazoa-specific and eukarya-conserved genes, and identifies novel proteins to be investigated as vaccine candidates and potential drug targets.
Journal ArticleDOI
Migration of the plastid genome to the nucleus in a peridinin dinoflagellate.
Jeremiah D. Hackett,Hwan Su Yoon,M. Bento Soares,Maria de Fatima Bonaldo,Thomas L. Casavant,Todd E. Scheetz,Tetyana Nosenko,Debashish Bhattacharya +7 more
TL;DR: 48 of the non-minicircle-encoded photosynthetic genes in the nuclear genome of A. tamarense, accounting for the majority of the photosystem, highlight the unique position of dinoflagellates as the champions of plastid gene transfer to the nucleus among Photosynthetic eukaryotes.
Journal ArticleDOI
Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis
Andrew M. Wier,Andrew M. Wier,Spencer V. Nyholm,Mark J. Mandel,Mark J. Mandel,R. Prisca Massengo-Tiassé,Amy L. Schaefer,Amy L. Schaefer,Irina Koroleva,Irina Koroleva,Sandra Splinter-BonDurant,Bartley Brown,Liliana Manzella,Liliana Manzella,Einat Snir,Hakeem Almabrazi,Todd E. Scheetz,Maria de Fatima Bonaldo,Thomas L. Casavant,M. Bento Soares,John E. Cronan,Jennifer L. Reed,Edward G. Ruby,Margaret J. McFall-Ngai +23 more
TL;DR: The transcriptional, metabolic, and ultrastructural characteristics of a diel rhythm that occurs in the symbiosis between the squid Euprymna scolopes and the luminous bacterium Vibrio fischeri are described.