J
John K. McCooke
Researcher at Murdoch University
Publications - 8
Citations - 1389
John K. McCooke is an academic researcher from Murdoch University. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 8, co-authored 8 publications receiving 1101 citations.
Papers
More filters
Journal ArticleDOI
A chromosome conformation capture ordered sequence of the barley genome
Martin Mascher,Heidrun Gundlach,Axel Himmelbach,Sebastian Beier,Sven Twardziok,Thomas Wicker,Volodymyr Radchuk,Christoph Dockter,Pete E. Hedley,Joanne Russell,Micha Bayer,Luke Ramsay,Hui Liu,Georg Haberer,Xiao-Qi Zhang,Qisen Zhang,Roberto A. Barrero,Lin Li,Stefan Taudien,Marco Groth,Marius Felder,Alex Hastie,Hana Šimková,Helena Staňková,Jan Vrána,Saki Chan,María Muñoz-Amatriaín,Rachid Ounit,Steve Wanamaker,Dan Bolser,Christian Colmsee,Thomas Schmutzer,Lala Aliyeva-Schnorr,Stefano Grasso,Jaakko Tanskanen,Anna Chailyan,Dharanya Sampath,Darren Heavens,Leah Clissold,Sujie Cao,Brett Chapman,Fei Dai,Yong Han,Hua Li,Xuan Li,Chongyun Lin,John K. McCooke,Cong Tan,Penghao Wang,Songbo Wang,Shuya Yin,Gaofeng Zhou,Jesse Poland,Matthew I. Bellgard,Ljudmilla Borisjuk,Andreas Houben,Jaroslav Doležel,Sarah Ayling,Stefano Lonardi,Paul J. Kersey,Peter Langridge,Gary J. Muehlbauer,Matthew D. Clark,Matthew D. Clark,Mario Caccamo,Mario Caccamo,Alan H. Schulman,Klaus F. X. Mayer,Matthias Platzer,Timothy J. Close,Uwe Scholz,Mats Hansson,Guoping Zhang,Ilka Braumann,Manuel Spannagl,Chengdao Li,Chengdao Li,Chengdao Li,Robbie Waugh,Robbie Waugh,Nils Stein,Nils Stein +81 more
TL;DR: The importance of the barley reference sequence for breeding is demonstrated by inspecting the genomic partitioning of sequence variation in modern elite germplasm, highlighting regions vulnerable to genetic erosion.
Journal ArticleDOI
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
Sebastian Beier,Axel Himmelbach,Christian Colmsee,Xiao-Qi Zhang,Roberto A. Barrero,Qisen Zhang,Lin Li,Micha Bayer,Dan Bolser,Stefan Taudien,Marco Groth,Marius Felder,Alex Hastie,Hana Šimková,Helena Staňková,Jan Vrána,Saki Chan,María Muñoz-Amatriaín,Rachid Ounit,Steve Wanamaker,Thomas Schmutzer,Lala Aliyeva-Schnorr,Stefano Grasso,Jaakko Tanskanen,Dharanya Sampath,Darren Heavens,Sujie Cao,Brett Chapman,Fei Dai,Yong Han,Hua Li,Xuan Li,Chongyun Lin,John K. McCooke,Cong Tan,Songbo Wang,Shuya Yin,Gaofeng Zhou,Jesse Poland,Matthew I. Bellgard,Andreas Houben,Jaroslav Doležel,Sarah Ayling,Stefano Lonardi,Peter Langridge,Gary J. Muehlbauer,Paul J. Kersey,Matthew D. Clark,Matthew D. Clark,Mario Caccamo,Mario Caccamo,Alan H. Schulman,Matthias Platzer,Timothy J. Close,Mats Hansson,Guoping Zhang,Ilka Braumann,Chengdao Li,Chengdao Li,Chengdao Li,Robbie Waugh,Robbie Waugh,Uwe Scholz,Nils Stein,Nils Stein,Martin Mascher +65 more
TL;DR: Morex as discussed by the authors was constructed by the International Barley Genome Sequencing Consortium (IBSC) using hierarchical shotgun sequencing, and the experimental and computational procedures to sequence and assemble more than 80,000 bacterial artificial chromosome (BAC) clones along the minimum tiling path of a genome-wide physical map, find and validate overlaps between adjacent BACs, and order and orient these BAC clusters along the seven barley chromosomes using positional information provided by dense genetic maps.
Journal ArticleDOI
A novel mutation causing nephronophthisis in the Lewis polycystic kidney rat localises to a conserved RCC1 domain in Nek8
John K. McCooke,Rudi Appels,Roberto A. Barrero,Alice Ding,Justyna E Ozimek-Kulik,Mathew I Bellgard,Grant Morahan,Jacqueline K. Phillips +7 more
TL;DR: The LPK rat is established as a novel model system for NPHP and the results indicate the whole propeller structure of the RCC1 domain is important, as the different mutations cause comparable phenotypes.
Journal ArticleDOI
Gene-enriched draft genome of the cattle tick Rhipicephalus microplus: assembly by the hybrid Pacific Biosciences/Illumina approach enabled analysis of the highly repetitive genome.
Roberto A. Barrero,Felix D. Guerrero,Michael Black,John K. McCooke,Brett Chapman,Faye D. Schilkey,Adalberto A. Pérez de León,Robert J. Miller,Sara Bruns,Jason Dobry,Galina Mikhaylenko,Keith E. Stormo,Callum J. Bell,Quanzhou Tao,Robert Bogden,Paula Moolhuijzen,Adam Hunter,Matthew I. Bellgard +17 more
TL;DR: The draft assembly of a tick genome that utilized a hybrid sequencing and assembly approach to capture the repetitive fractions of the genome and the finding of a novel cytochrome P450 CYP41 homolog that shows similar protein folding structures to known CYP 41 proteins known to be involved in acaricide resistance is reported.
Journal ArticleDOI
The mitochondrial genome of a Texas outbreak strain of the cattle tick, Rhipicephalus (Boophilus) microplus, derived from whole genome sequencing Pacific Biosciences and Illumina reads.
John K. McCooke,Felix D. Guerrero,Roberto A. Barrero,Michael Black,Adam Hunter,Callum J. Bell,Faye D. Schilkey,Robert J. Miller,Matthew I. Bellgard +8 more
TL;DR: This study assembled the complete R. microplus mitochondrial genome from Illumina and Pac Bio sequencing reads obtained from the ongoing R.microplus (Deutsch strain from Texas, USA) genome sequencing project and compared the Deutsch strainMitogenome to the mitogenome from a Brazilian R.Microplus and from an Australian cattle tick that has recently been taxonomically designated as Rhipicephalus australis.