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Ilka Braumann
Researcher at Carlsberg Laboratory
Publications - 21
Citations - 1874
Ilka Braumann is an academic researcher from Carlsberg Laboratory. The author has contributed to research in topics: Hordeum vulgare & Genome. The author has an hindex of 11, co-authored 19 publications receiving 1398 citations.
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Journal ArticleDOI
A chromosome conformation capture ordered sequence of the barley genome
Martin Mascher,Heidrun Gundlach,Axel Himmelbach,Sebastian Beier,Sven Twardziok,Thomas Wicker,Volodymyr Radchuk,Christoph Dockter,Pete E. Hedley,Joanne Russell,Micha Bayer,Luke Ramsay,Hui Liu,Georg Haberer,Xiao-Qi Zhang,Qisen Zhang,Roberto A. Barrero,Lin Li,Stefan Taudien,Marco Groth,Marius Felder,Alex Hastie,Hana Šimková,Helena Staňková,Jan Vrána,Saki Chan,María Muñoz-Amatriaín,Rachid Ounit,Steve Wanamaker,Dan Bolser,Christian Colmsee,Thomas Schmutzer,Lala Aliyeva-Schnorr,Stefano Grasso,Jaakko Tanskanen,Anna Chailyan,Dharanya Sampath,Darren Heavens,Leah Clissold,Sujie Cao,Brett Chapman,Fei Dai,Yong Han,Hua Li,Xuan Li,Chongyun Lin,John K. McCooke,Cong Tan,Penghao Wang,Songbo Wang,Shuya Yin,Gaofeng Zhou,Jesse Poland,Matthew I. Bellgard,Ljudmilla Borisjuk,Andreas Houben,Jaroslav Doležel,Sarah Ayling,Stefano Lonardi,Paul J. Kersey,Peter Langridge,Gary J. Muehlbauer,Matthew D. Clark,Matthew D. Clark,Mario Caccamo,Mario Caccamo,Alan H. Schulman,Klaus F. X. Mayer,Matthias Platzer,Timothy J. Close,Uwe Scholz,Mats Hansson,Guoping Zhang,Ilka Braumann,Manuel Spannagl,Chengdao Li,Chengdao Li,Chengdao Li,Robbie Waugh,Robbie Waugh,Nils Stein,Nils Stein +81 more
TL;DR: The importance of the barley reference sequence for breeding is demonstrated by inspecting the genomic partitioning of sequence variation in modern elite germplasm, highlighting regions vulnerable to genetic erosion.
Journal ArticleDOI
TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools
Cécile Monat,Sudharsan Padmarasu,Thomas Lux,Thomas Wicker,Heidrun Gundlach,Axel Himmelbach,Jennifer Ens,Chengdao Li,Chengdao Li,Gary J. Muehlbauer,Alan H. Schulman,Robbie Waugh,Robbie Waugh,Ilka Braumann,Curtis J. Pozniak,Uwe Scholz,Klaus F. X. Mayer,Manuel Spannagl,Nils Stein,Nils Stein,Martin Mascher +20 more
TL;DR: TRITEX, an open-source computational workflow that combines paired-end, mate-pair, 10X Genomics linked-read with chromosome conformation capture sequencing data to construct sequence scaffolds with megabase-scale contiguity ordered into chromosomal pseudomolecules is presented.
Journal ArticleDOI
Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley.
Shakhira Zakhrabekova,Simon P. Gough,Ilka Braumann,André H. Müller,Joakim Lundqvist,Katharina Ahmann,Christoph Dockter,Izabela Matyszczak,Marzena Kurowska,Arnis Druka,Robbie Waugh,Andreas Graner,Nils Stein,Burkhard Steuernagel,Udda Lundqvist,Mats Hansson +15 more
TL;DR: Alleles of Mat-a have important and demonstrated breeding value in barley but probably also in many other day-length-sensitive crop plants, where they may tune adaptation to different geographic regions and climatic conditions, a critical issue in times of global warming.
Journal ArticleDOI
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
Sebastian Beier,Axel Himmelbach,Christian Colmsee,Xiao-Qi Zhang,Roberto A. Barrero,Qisen Zhang,Lin Li,Micha Bayer,Dan Bolser,Stefan Taudien,Marco Groth,Marius Felder,Alex Hastie,Hana Šimková,Helena Staňková,Jan Vrána,Saki Chan,María Muñoz-Amatriaín,Rachid Ounit,Steve Wanamaker,Thomas Schmutzer,Lala Aliyeva-Schnorr,Stefano Grasso,Jaakko Tanskanen,Dharanya Sampath,Darren Heavens,Sujie Cao,Brett Chapman,Fei Dai,Yong Han,Hua Li,Xuan Li,Chongyun Lin,John K. McCooke,Cong Tan,Songbo Wang,Shuya Yin,Gaofeng Zhou,Jesse Poland,Matthew I. Bellgard,Andreas Houben,Jaroslav Doležel,Sarah Ayling,Stefano Lonardi,Peter Langridge,Gary J. Muehlbauer,Paul J. Kersey,Matthew D. Clark,Matthew D. Clark,Mario Caccamo,Mario Caccamo,Alan H. Schulman,Matthias Platzer,Timothy J. Close,Mats Hansson,Guoping Zhang,Ilka Braumann,Chengdao Li,Chengdao Li,Chengdao Li,Robbie Waugh,Robbie Waugh,Uwe Scholz,Nils Stein,Nils Stein,Martin Mascher +65 more
TL;DR: Morex as discussed by the authors was constructed by the International Barley Genome Sequencing Consortium (IBSC) using hierarchical shotgun sequencing, and the experimental and computational procedures to sequence and assemble more than 80,000 bacterial artificial chromosome (BAC) clones along the minimum tiling path of a genome-wide physical map, find and validate overlaps between adjacent BACs, and order and orient these BAC clusters along the seven barley chromosomes using positional information provided by dense genetic maps.
Journal ArticleDOI
Induced Variations in Brassinosteroid Genes Define Barley Height and Sturdiness, and Expand the Green Revolution Genetic Toolkit
Christoph Dockter,Damian Gruszka,Ilka Braumann,Arnis Druka,Ilze Druka,Jerome D. Franckowiak,Simon P. Gough,Anna Janeczko,Marzena Kurowska,Joakim Lundqvist,Udda Lundqvist,Marek Marzec,Izabela Matyszczak,André H. Müller,Jana Oklestkova,Burkhard Schulz,Shakhira Zakhrabekova,Mats Hansson +17 more
TL;DR: P phenotypic traits, including sturdy culm, specific for deficiencies in brassinosteroid biosynthesis and signaling in semidwarf mutants of barley are identified, and potential genetic building blocks for breeding strategies with sturdy and climate-tolerant barley cultivars are identified.