J
Jonas Koeppel
Researcher at Wellcome Trust Sanger Institute
Publications - 10
Citations - 376
Jonas Koeppel is an academic researcher from Wellcome Trust Sanger Institute. The author has contributed to research in topics: Medicine & Computer science. The author has an hindex of 4, co-authored 6 publications receiving 126 citations. Previous affiliations of Jonas Koeppel include German Cancer Research Center & Harvard University.
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Journal ArticleDOI
The CDK inhibitor CR8 acts as a molecular glue degrader that depletes cyclin K
Mikolaj Slabicki,Mikolaj Slabicki,Mikolaj Slabicki,Zuzanna Kozicka,Zuzanna Kozicka,Georg Petzold,Yen-Der Li,Yen-Der Li,Manisha Manojkumar,Manisha Manojkumar,Manisha Manojkumar,Richard D. Bunker,Katherine A. Donovan,Quinlan L. Sievers,Quinlan L. Sievers,Jonas Koeppel,Jonas Koeppel,Jonas Koeppel,Dakota Suchyta,Dakota Suchyta,Adam S. Sperling,Adam S. Sperling,Emma C. Fink,Emma C. Fink,Jessica A. Gasser,Jessica A. Gasser,Li R. Wang,Steven M. Corsello,Steven M. Corsello,Rob S. Sellar,Rob S. Sellar,Rob S. Sellar,Max Jan,Max Jan,Dennis Gillingham,Claudia Scholl,Stefan Fröhling,Todd R. Golub,Todd R. Golub,Todd R. Golub,Eric S. Fischer,Nicolas H. Thomä,Benjamin L. Ebert,Benjamin L. Ebert,Benjamin L. Ebert +44 more
TL;DR: It is demonstrated that chemical alteration of surface-exposed moieties can confer gain-of-function glue properties to an inhibitor, and this is proposed as a broader strategy through which target-binding molecules could be converted into molecular glues.
Journal ArticleDOI
Small molecule-induced polymerization triggers degradation of BCL6
Mikolaj Slabicki,Mikolaj Slabicki,Mikolaj Slabicki,Hojong Yoon,Jonas Koeppel,Jonas Koeppel,Jonas Koeppel,Lena Nitsch,Lena Nitsch,Lena Nitsch,Shourya S. Roy Burman,Cristina Di Genua,Cristina Di Genua,Katherine A. Donovan,Adam S. Sperling,Adam S. Sperling,Moritz Hunkeler,Jonathan M. Tsai,Jonathan M. Tsai,Rohan Sharma,Andrew A Guirguis,Andrew A Guirguis,Charles Zou,Priya Chudasama,Jessica A. Gasser,Jessica A. Gasser,Peter Miller,Peter Miller,Claudia Scholl,Stefan Fröhling,Radosław P. Nowak,Eric S. Fischer,Benjamin L. Ebert,Benjamin L. Ebert,Benjamin L. Ebert +34 more
TL;DR: The findings demonstrate that a small molecule can induce polymerization coupled to highly specific protein degradation, which in the case of BCL6 leads to superior pharmacological activity, creating new avenues for the development of therapeutics and synthetic biology.
Journal ArticleDOI
Selection of Oncogenic Mutant Clones in Normal Human Skin Varies with Body Site.
Joanna C. Fowler,Charlotte King,Christopher J. Bryant,Michael W. J. Hall,Michael W. J. Hall,Sood R,Swee Hoe Ong,Eleanor Earp,David Fernandez-Antoran,Jonas Koeppel,Stefan C. Dentro,Stefan C. Dentro,David Shorthouse,Amer Durrani,Kate Fife,Edward Rytina,Doreen Milne,Amit Roshan,Amit Roshan,Krishnaa Mahububani,Kourosh Saeb-Parsy,Benjamin A. Hall,Moritz Gerstung,Philip H. Jones,Philip H. Jones +24 more
TL;DR: Most mutations were caused by ultraviolet (UV) light, but mutational signature analysis suggested differences in DNA repair processes between sites, and analysis of hair follicles showed mutations in the upper follicle resembled adjacent skin, but the lower follicle was sparsely mutated.
Journal ArticleDOI
Loss of Neurological Disease HSAN-I-Associated Gene SPTLC2 Impairs CD8+ T Cell Responses to Infection by Inhibiting T Cell Metabolic Fitness.
Jingxia Wu,Sicong Ma,Sicong Ma,Roger Sandhoff,Yanan Ming,Agnes Hotz-Wagenblatt,Vincent Timmerman,Nathalie Bonello-Palot,Beate Schlotter-Weigel,Michaela Auer-Grumbach,Pavel Seeman,Wolfgang Löscher,Markus Reindl,Florian Weiss,Eric Mah,Nina Weisshaar,Nina Weisshaar,Alaa Madi,Alaa Madi,Kerstin Mohr,Tilo Schlimbach,Rubí M.-H. Velasco Cárdenas,Jonas Koeppel,Florian Grünschläger,Lisann Müller,Maren Baumeister,Britta Brügger,Michael Schmitt,Guido H. Wabnitz,Yvonne Samstag,Guoliang Cui,Guoliang Cui +31 more
TL;DR: Protective CD8+ T cell responses in HSAN-I patient PBMCs and Sptlc2-deficient mice were restored by supplementing with sphingolipids and pharmacologically inhibiting ER stress-induced cell death, indicating that SPTLC2 underpins protective immunity by translating extracellular stimuli into intracellular anabolic signals and antagonizes ER stress to promote T-cell metabolic fitness.
Journal ArticleDOI
Prediction of prime editing insertion efficiencies using sequence features and DNA repair determinants
Jonas Koeppel,Juliane Weller,Elin Madli Peets,Ananth Pallaseni,Ivan Kuzmin,Uku Raudvere,Hedi Peterson,Fabio G. Liberante,Leopold Parts +8 more
TL;DR: In this article , the authors designed a library of 3,604 sequences of various lengths and measured the frequency of their insertion into four genomic sites in three human cell lines, using different prime editor systems in varying DNA repair contexts.