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Niels J. Rupp
Researcher at University of Zurich
Publications - 111
Citations - 3604
Niels J. Rupp is an academic researcher from University of Zurich. The author has contributed to research in topics: Medicine & Prostate cancer. The author has an hindex of 20, co-authored 82 publications receiving 2486 citations.
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Journal ArticleDOI
Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer
Christopher E. Barbieri,Sylvan C. Baca,Sylvan C. Baca,Michael S. Lawrence,Francesca Demichelis,Francesca Demichelis,Mirjam Blattner,Jean Philippe Theurillat,Thomas A. White,Petar Stojanov,Eliezer M. Van Allen,Eliezer M. Van Allen,Nicolas Stransky,Elizabeth Nickerson,Sung Suk Chae,Gunther Boysen,Daniel Auclair,Robert C. Onofrio,Kyung Park,Naoki Kitabayashi,Theresa Y. MacDonald,Karen Sheikh,Terry Vuong,Candace Guiducci,Kristian Cibulskis,Andrey Sivachenko,Scott L. Carter,Gordon Saksena,Douglas Voet,Wasay M. Hussain,Alex H. Ramos,Alex H. Ramos,Wendy Winckler,Michelle C Redman,Kristin Ardlie,Ashutosh K. Tewari,Juan Miguel Mosquera,Niels J. Rupp,Peter J. Wild,Holger Moch,Colm Morrissey,Peter S. Nelson,Peter S. Nelson,Philip W. Kantoff,Stacey Gabriel,Todd R. Golub,Matthew Meyerson,Eric S. Lander,Eric S. Lander,Gad Getz,Mark A. Rubin,Levi A. Garraway +51 more
TL;DR: SPOP mutations may define a new molecular subtype of prostate cancer, with mutations involving the SPOP substrate-binding cleft in 6–15% of tumors across multiple independent cohorts.
Journal ArticleDOI
Automated Gleason grading of prostate cancer tissue microarrays via deep learning
Eirini Arvaniti,Eirini Arvaniti,Kim S. Fricker,Michael Moret,Niels J. Rupp,Thomas Hermanns,Christian D. Fankhauser,Norbert Wey,Peter J. Wild,Jan H. Rueschoff,Manfred Claassen,Manfred Claassen +11 more
TL;DR: A deep learning approach for automated Gleason grading of prostate cancer tissue microarrays with Hematoxylin and Eosin (H&E) staining achieves pathology expert-level stratification of patients into prognostically distinct groups, on the basis of disease-specific survival data available for the test cohort.
Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer
Christopher E. Barbieri,Sylvan C. Baca,Sylvan C. Baca,Michael S. Lawrence,Francesca Demichelis,Francesca Demichelis,Mirjam Blattner,Jean Philippe Theurillat,Thomas A. White,Petar Stojanov,Eliezer M. Van Allen,Eliezer M. Van Allen,Nicolas Stransky,Elizabeth Nickerson,Sung Suk Chae,Gunther Boysen,Daniel Auclair,Robert C. Onofrio,Kyung Park,Naoki Kitabayashi,Theresa Y. MacDonald,Karen Sheikh,Terry Vuong,Candace Guiducci,Kristian Cibulskis,Andrey Sivachenko,Scott L. Carter,Gordon Saksena,Douglas Voet,Wasay M. Hussain,Alex H. Ramos,Alex H. Ramos,Wendy Winckler,Michelle C Redman,Kristin Ardlie,Ashutosh K. Tewari,Juan Miguel Mosquera,Niels J. Rupp,Peter J. Wild,Holger Moch,Colm Morrissey,Peter S. Nelson,Peter S. Nelson,Philip W. Kantoff,Stacey Gabriel,Todd R. Golub,Matthew Meyerson,Eric S. Lander,Eric S. Lander,Gad Getz,Mark A. Rubin,Levi A. Garraway +51 more
TL;DR: The National Human Genome Research Institute (U.S.) (Large Scale Sequencing Program Grant U54 HG003067) as discussed by the authors has provided a grant for large scale sequencing.
Journal ArticleDOI
Molecular Profiling of Mammary Analog Secretory Carcinoma Revealed a Subset of Tumors Harboring a Novel ETV6-RET Translocation: Report of 10 Cases.
Alena Skálová,Tomas Vanecek,Petr Martinek,Ilan Weinreb,Todd M. Stevens,Roderick H.W. Simpson,Martin Hyrcza,Niels J. Rupp,Martina Baneckova,Michael Michal,David Slouka,Tomáš Svoboda,Alena Metelkova,Arghavan Etebarian,Jaroslav Pavelka,Steven J. Potts,Jason Christiansen,Petr Steiner,Michal Michal +18 more
TL;DR: The present study comprised a clinical, histologic, and molecular analysis of 10 cases of secretory carcinoma, with typical morphology and immunoprofile harboring a novel ETV6-RET translocation.
Posted ContentDOI
Automated Gleason grading of prostate cancer tissue microarrays via deep learning
Eirini Arvaniti,Kim S. Fricker,Michael Moret,Niels J. Rupp,Thomas Hermanns,Christian D. Fankhauser,Norbert Wey,Peter J. Wild,Jan H. Rueschoff,Manfred Claassen +9 more
TL;DR: This study presents a deep learning approach for automated Gleason grading of prostate cancer tissue microarrays with Hematoxylin and Eosin (H&E) staining and shows promising results regarding the applicability of deep learning-based solutions towards more objective and reproducible prostate cancer grading.