O
Olaf Ronneberger
Researcher at University of Freiburg
Publications - 142
Citations - 98214
Olaf Ronneberger is an academic researcher from University of Freiburg. The author has contributed to research in topics: Segmentation & Image segmentation. The author has an hindex of 45, co-authored 140 publications receiving 60179 citations. Previous affiliations of Olaf Ronneberger include Google & University of Jena.
Papers
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Journal ArticleDOI
Vertebrate kidney tubules elongate using a planar cell polarity-dependent, rosette-based mechanism of convergent extension.
Soeren S. Lienkamp,Kun Liu,Courtney M. Karner,Thomas L. Carroll,Olaf Ronneberger,John B. Wallingford,John B. Wallingford,Gerd Walz +7 more
TL;DR: In vivo imaging is used to show for the first time that mediolaterally oriented cell intercalation is fundamental to vertebrate kidney morphogenesis, and finds that kidney tubule elongation is driven in large part by a myosin-dependent, multicellular rosette–based mechanism, previously only described in Drosophila melanogaster.
Proceedings Article
A Probabilistic U-Net for Segmentation of Ambiguous Images
Simon A. A. Kohl,Bernardino Romera-Paredes,Clemens Meyer,Jeffrey De Fauw,Joseph R. Ledsam,Klaus H. Maier-Hein,S. M. Ali Eslami,Danilo Jimenez Rezende,Olaf Ronneberger +8 more
TL;DR: In this paper, a generative segmentation model based on a combination of a U-Net with a conditional variational autoencoder is proposed, which is capable of efficiently producing an unlimited number of plausible hypotheses.
Book ChapterDOI
Invited Talk: U-Net Convolutional Networks for Biomedical Image Segmentation
TL;DR: This talk will present the u-net for biomedical image segmentation, the architecture consists of an analysis path and a synthesis path with additional shortcut-connections for annotated training images.
Journal ArticleDOI
Applying and improving AlphaFold at CASP14
John M. Jumper,Richard Evans,Alexander Pritzel,Tim Green,Michael Figurnov,Olaf Ronneberger,Kathryn Tunyasuvunakool,Russell Bates,Augustin Žídek,Anna Potapenko,Alex Bridgland,Clemens Meyer,Simon A. A. Kohl,Andrew J. Ballard,Andrew Cowie,Bernardino Romera-Paredes,Stanislav Nikolov,R. D. Jain,Jonas Adler,Trevor Back,Stig Petersen,David Reiman,Ellen Clancy,Michal Zielinski,Martin Steinegger,Michalina Pacholska,Tamas Berghammer,David Silver,Oriol Vinyals,Andrew W. Senior,Koray Kavukcuoglu,Pushmeet Kohli,Demis Hassabis +32 more
TL;DR: The AlphaFold system as mentioned in this paper achieved the state-of-the-art performance in protein structure prediction in the 14th Critical Assessment of Protein Structure Prediction (CASP14), achieving a median domain GDT_TS of 92.4.
Journal ArticleDOI
XuvTools: free, fast and reliable stitching of large 3D datasets.
M. Emmenlauer,Olaf Ronneberger,Aaron Ponti,P. Schwarb,Alessandra Griffa,Alida Filippi,Roland Nitschke,Wolfgang Driever,Hans Burkhardt +8 more
TL;DR: Although hardware solutions exist for fast and reproducible acquisition of multiple 3D tiles, generic software solutions are missing to assemble (‘stitch’) these tiles quickly and accurately.