P
Paolo Carnevali
Publications - 8
Citations - 1548
Paolo Carnevali is an academic researcher. The author has contributed to research in topics: Genome & Human genome. The author has an hindex of 5, co-authored 6 publications receiving 1400 citations.
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Journal ArticleDOI
Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays
Radoje Drmanac,Andrew B. Sparks,Matthew J. Callow,Aaron L. Halpern,Norman L. Burns,Bahram G. Kermani,Paolo Carnevali,Igor Nazarenko,Geoffrey B. Nilsen,George Yeung,Fredrik A. Dahl,Andres Fernandez,Bryan Staker,Krishna Pant,Jonathan Baccash,Adam P. Borcherding,Anushka Brownley,Ryan J. Cedeno,Linsu Chen,Daniel F. Chernikoff,Alex Cheung,Razvan Chirita,Benjamin Curson,Jessica Ebert,Coleen R. Hacker,Robert Hartlage,Brian Hauser,Steve Huang,Yuan Jiang,Vitali Karpinchyk,Mark Koenig,Calvin Kong,Tom Landers,Catherine Le,Jia Liu,Celeste E. McBride,Matt Morenzoni,Robert E. Morey,Karl Mutch,Helena Perazich,Kimberly Perry,Brock A. Peters,Joe Peterson,Charit L. Pethiyagoda,Kaliprasad Pothuraju,Claudia Richter,Abraham M. Rosenbaum,Shaunak Roy,Jay Shafto,Uladzislau Sharanhovich,Karen W. Shannon,Conrad G. Sheppy,Michel Sun,Joseph V. Thakuria,Anne Tran,Dylan Vu,Alexander Wait Zaranek,Xiaodi Wu,Snezana Drmanac,Arnold R. Oliphant,William C. Banyai,Bruce L. Martin,Dennis G. Ballinger,George M. Church,Clifford Reid +64 more
TL;DR: A genome sequencing platform that achieves efficient imaging and low reagent consumption with combinatorial probe anchor ligation chemistry to independently assay each base from patterned nanoarrays of self-assembling DNA nanoballs is described.
Patent
Method and system for calling variations in a sample polynucleotide sequence with respect to a reference polynucleotide sequence
Paolo Carnevali,Jonathan M. Baccash,Igor Nazarenko,Aaron L. Halpern,Geoffrey B. Nilsen,Bruce K. Martin,Radoje Drmanac +6 more
TL;DR: In this article, the authors present an approach for calling variations in a sample polynucleotide sequence compared to a reference polynotide sequence. But the approach is limited to the case where a likelihood exists that one or more bases of the sample polyclotide sequence are changed from corresponding bases in the reference polyclonal sequence.
Journal ArticleDOI
Semi-automated assembly of high-quality diploid human reference genomes
Erich D. Jarvis,Giulio Formenti,Arang Rhie,Andrea Guarracino,Chengde Yang,Jonathan Wood,Alan Tracey,Françoise Thibaud-Nissen,Mitchell R. Vollger,David Porubsky,Haoyu Cheng,Mobin Asri,Glennis A. Logsdon,Paolo Carnevali,Mark Chaisson,Chen-Shan Chin,Sarah Cody,Joanna Collins,Peter J.R. Ebert,Merly Escalona,Olivier Fedrigo,Robert S. Fulton,Lucinda Fulton,Shilpa Garg,Jay Ghurye,Edward Green,Ira M. Hall,William Harvey,Patrick Hasenfeld,Alex Hastie,Marina Haukness,Miten Jain,Melanie Kirsche,Mikhail Kolmogorov,Jan O. Korbel,Sergey Koren,Jonas Korlach,Joyce V. Lee,Daofeng Li,Tina A. Graves Lindsay,Julian K. Lucas,Feng Luo,Tobias Marschall,Jennifer McDaniel,Fan Nie,Hugh E. Olsen,Nathan D. Olson,Trevor Pesout,Daniela Puiu,Allison A. Regier,Jue Ruan,Steven L. Salzberg,Ashley D. Sanders,Michael C. Schatz,Anthony D. Schmitt,Valerie A. Schneider,Siddarth Gautham Selvaraj,Kishwar Shafin,Alaina Shumate,Catherine Stober,James Torrance,Justin Wagner,Jianxin Wang,Aaron M. Wenger,Chuan Xiao,Aleksey V. Zimin,Guojie Zhang,Ting Wang,Heng Li,Erik Garrison,David Haussler,Justin M. Zook,Evan E. Eichler,Adam M. Phillippy,Benedict Paten,Kerstin Howe,Karen H. Miga +76 more
TL;DR: The Human Pangenome Reference Consortium (HPC) as mentioned in this paper was formed with the goal of creating high-quality, cost-effective, diploid genome assemblies for a pangeneome reference that represents human genetic diversity.
Patent
Identifying rearrangements in a sequenced genome
TL;DR: In this article, the authors present methods, apparatuses, and systems for identification of junctions (e.g., resulting from large-scale rearrangements) of a sequenced genome with respect to a human genome reference sequence.
Patent
Determining variants in a genome of a heterogeneous sample
TL;DR: In this paper, a variant score is used to determine a variant calibrated score indicating a likelihood that the variant call is correct, which can be used for determining a variant relative to a reference.