A
Allison A. Regier
Researcher at Washington University in St. Louis
Publications - 21
Citations - 1566
Allison A. Regier is an academic researcher from Washington University in St. Louis. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 9, co-authored 19 publications receiving 922 citations. Previous affiliations of Allison A. Regier include University of Notre Dame.
Papers
More filters
Journal ArticleDOI
Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle
Ewen F. Kirkness,Brian J. Haas,Brian J. Haas,Weilin Sun,Henk R. Braig,M. Alejandra Perotti,John M. Clark,Si Hyeock Lee,Hugh M. Robertson,Ryan C. Kennedy,Eran Elhaik,Daniel Gerlach,Daniel Gerlach,Evgenia V. Kriventseva,Evgenia V. Kriventseva,Christine G. Elsik,Christine G. Elsik,Dan Graur,Catherine A. Hill,Jan A. Veenstra,Brian P. Walenz,Jose M. C. Tubio,José M. C. Ribeiro,Julio Rozas,J. Spencer Johnston,Justin T. Reese,Aleksandar Popadić,Marta Tojo,Didier Raoult,David L. Reed,Yoshinori Tomoyasu,Yoshinori Tomoyasu,Emily C. Kraus,Omprakash Mittapalli,Venu M. Margam,Hongmei Li,Jason M. Meyer,Reed M. Johnson,Jeanne Romero-Severson,Janice P. Vanzee,David Alvarez-Ponce,Filipe G. Vieira,Montserrat Aguadé,Sara Guirao-Rico,Juan Manuel Anzola,Kyong Sup Yoon,Joseph P. Strycharz,Maria F. Unger,Scott Christley,Neil F. Lobo,Manfredo J. Seufferheld,NaiKuan Wang,Gregory A. Dasch,Claudio J. Struchiner,Greg Madey,Linda Hannick,Shelby L. Bidwell,Vinita Joardar,Elisabet Caler,Renfu Shao,Stephen C. Barker,Stephen L. Cameron,Robert V. Bruggner,Allison A. Regier,Justin Johnson,Lakshmi D. Viswanathan,T. Utterback,Granger G. Sutton,Daniel Lawson,Robert M. Waterhouse,Robert M. Waterhouse,J. Craig Venter,Robert L. Strausberg,May R. Berenbaum,Frank H. Collins,Evgeny M. Zdobnov,Evgeny M. Zdobnov,Evgeny M. Zdobnov,Barry R. Pittendrigh +78 more
TL;DR: The genome sequences of the body louse and its primary bacterial endosymbiont Candidatus Riesia pediculicola are presented, providing a reference for studies of holometabolous insects.
Journal ArticleDOI
Haplotype-resolved diverse human genomes and integrated analysis of structural variation.
Peter Ebert,Peter A. Audano,Qihui Zhu,Bernardo Rodriguez-Martin,David Porubsky,Marc Jan Bonder,Marc Jan Bonder,Arvis Sulovari,Jana Ebler,Weichen Zhou,Rebecca Serra Mari,Feyza Yilmaz,Xuefang Zhao,Xuefang Zhao,PingHsun Hsieh,Joyce V. Lee,Sushant Kumar,Jiadong Lin,Tobias Rausch,Yu Chen,Jingwen Ren,Martin Santamarina,Wolfram Höps,Hufsah Ashraf,Nelson T. Chuang,Xiaofei Yang,Katherine M. Munson,Alexandra P. Lewis,Susan Fairley,Luke J. Tallon,Wayne E. Clarke,Anna O. Basile,Marta Byrska-Bishop,André Corvelo,Uday S. Evani,Tsung Yu Lu,Mark Chaisson,Junjie Chen,Chong Li,Harrison Brand,Harrison Brand,Aaron M. Wenger,Maryam Ghareghani,Maryam Ghareghani,Maryam Ghareghani,William T. Harvey,Benjamin Raeder,Patrick Hasenfeld,Allison A. Regier,Haley J. Abel,Ira M. Hall,Paul Flicek,Oliver Stegle,Oliver Stegle,Mark Gerstein,Jose M. C. Tubio,Zepeng Mu,Yang I. Li,Xinghua Shi,Alex Hastie,Kai Ye,Kai Ye,Zechen Chong,Ashley D. Sanders,Michael C. Zody,Michael E. Talkowski,Michael E. Talkowski,Ryan E. Mills,Scott E. Devine,Charles Lee,Charles Lee,Jan O. Korbel,Tobias Marschall,Evan E. Eichler +73 more
TL;DR: In this article, the authors present 64 assembled haplotypes from 32 diverse human genomes, which integrate all forms of genetic variation, even across complex loci, and identify 107,590 structural variants (SVs), of which 68% were not discovered with short-read sequencing.
Journal ArticleDOI
Mapping and Characterization of Structural Variation in 17,795 Human Genomes
Haley J. Abel,David E. Larson,Allison A. Regier,Colby Chiang,Indraniel Das,Krishna L. Kanchi,Ryan M. Layer,Benjamin M. Neale,Benjamin M. Neale,William J Salerno,Catherine Reeves,Steven Buyske,Nhgri Centers for Common Disease Genomics,Tara C. Matise,Donna M. Muzny,Michael C. Zody,Eric S. Lander,Eric S. Lander,Eric S. Lander,Susan K. Dutcher,Nathan O. Stitziel,Ira M. Hall +21 more
TL;DR: A scalable pipeline is used to map and characterize structural variants in 17,795 deeply sequenced human genomes to create the largest, to the authors' knowledge, whole-genome-sequencing-based structural variant resource so far and infer the dosage sensitivity of genes and noncoding elements.
Journal ArticleDOI
Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects
Allison A. Regier,Yossi Farjoun,David E. Larson,Olga Krasheninina,Hyun Min Kang,Daniel P. Howrigan,Bo Juen Chen,Manisha Kher,Eric Banks,Darren C. Ames,Adam C. English,Heng Li,Jinchuan Xing,Yeting Zhang,Tara C. Matise,Gonçalo R. Abecasis,Will Salerno,Michael C. Zody,Benjamin M. Neale,Ira M. Hall +19 more
TL;DR: US genome centers and NIH programs define WGS data processing standards and a flexible validation method, facilitating collaboration in human genetics research.
Posted ContentDOI
High coverage whole genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios
Marta Byrska-Bishop,Uday S. Evani,Xuefang Zhao,Xuefang Zhao,Anna O. Basile,Haley J. Abel,Allison A. Regier,André Corvelo,Wayne E. Clarke,Rajeeva Musunuri,Kshithija Nagulapalli,Susan Fairley,Alexi Runnels,Lara Heermans Winterkorn,Ernesto Lowy-Gallego,Paul Flicek,Soren Germer,Harrison Brand,Ira M. Hall,Michael E. Talkowski,Giuseppe Narzisi,Michael C. Zody +21 more
TL;DR: The 1000 Genomes Project (1kGP) dataset is the largest fully open resource of whole genome sequencing (WGS) data consented for public distribution of raw sequence data without access or use restrictions.