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Paul C. Blainey
Researcher at Massachusetts Institute of Technology
Publications - 148
Citations - 8365
Paul C. Blainey is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Genome & Metagenomics. The author has an hindex of 39, co-authored 137 publications receiving 6154 citations. Previous affiliations of Paul C. Blainey include University of Washington & Harvard University.
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Journal ArticleDOI
Commensal Microbiota Promote Lung Cancer Development via γδ T Cells.
Chengcheng Jin,Georgia Lagoudas,Chen Zhao,Susan Bullman,Susan Bullman,Arjun Bhutkar,Bo Hu,Samuel Ameh,Demi Sandel,Xu Sue Liang,Sarah A. Mazzilli,Mark T. Whary,Matthew Meyerson,Matthew Meyerson,Ronald N. Germain,Paul C. Blainey,James G. Fox,Tyler Jacks +17 more
TL;DR: In this paper, the authors provide evidence that local microbiota provoke inflammation associated with lung adenocarcinoma by activating lung resident γδ T cells, and link local microbiota-immune crosstalk to lung tumor development and define key cellular and molecular mediators that may serve as effective targets in lung cancer intervention.
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A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA
TL;DR: High-speed imaging of single hOgg1 enzyme molecules diffusing along DNA stretched by shear flow indicates that DNA glycosylases locate lesion bases by a massively redundant search in which the enzyme selectively binds 8-oxoguanine under kinetic control.
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Massively multiplexed nucleic acid detection with Cas13.
Cheri M. Ackerman,Cameron Myhrvold,Cameron Myhrvold,Sri Gowtham Thakku,Sri Gowtham Thakku,Catherine A. Freije,Catherine A. Freije,Hayden C. Metsky,David Yang,Simon Ye,Simon Ye,Chloe K. Boehm,Tinna Solveig F. Kosoko-Thoroddsen,Jared Kehe,Tien G. Nguyen,Amber Carter,Anthony Kulesa,John R. Barnes,Vivien G. Dugan,Deborah T. Hung,Deborah T. Hung,Paul C. Blainey,Pardis C. Sabeti +22 more
TL;DR: CRISPR-based nucleic acid detection is used in a platform that can simultaneously detect 169 human-associated viruses in multiple samples, providing scalable, multiplexed pathogen detection aimed at routine surveillance for public health.
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A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients
Andrew Brantley Hall,Andrew Brantley Hall,Moran Yassour,Moran Yassour,Jenny Sauk,Jenny Sauk,Ashley L. Garner,Ashley L. Garner,Xiaofang Jiang,Xiaofang Jiang,Timothy D. Arthur,Timothy D. Arthur,Georgia K. Lagoudas,Georgia K. Lagoudas,Tommi Vatanen,Tommi Vatanen,Nadine Fornelos,Nadine Fornelos,Robin G. Wilson,Madeline Bertha,Melissa Cohen,John J. Garber,Hamed Khalili,Dirk Gevers,Dirk Gevers,Dirk Gevers,Ashwin N. Ananthakrishnan,Subramaniam Kugathasan,Eric S. Lander,Eric S. Lander,Eric S. Lander,Paul C. Blainey,Paul C. Blainey,Hera Vlamakis,Hera Vlamakis,Ramnik J. Xavier,Curtis Huttenhower,Curtis Huttenhower +37 more
TL;DR: In this article, the authors performed metagenomic sequencing of monthly stool samples from 20 IBD patients and 12 controls (266 total samples) and identified strain-specific functional correlates with IBD outcomes.
Journal ArticleDOI
Single-Molecule Kinetics of λ Exonuclease Reveal Base Dependence and Dynamic Disorder
Antoine M. van Oijen,Paul C. Blainey,Donald J. Crampton,Charles C. Richardson,Tom Ellenberger,X. Sunney Xie +5 more
TL;DR: A multiplexed approach based on flow-stretched DNA is used to monitor the enzymatic digestion of λ-phage DNA by individual bacteriophage λ exonuclease molecules, establishing that the melting of a base from the DNA is the rate-limiting step in the catalytic cycle.