P
Petra S. Langendijk-Genevaux
Researcher at Swiss Institute of Bioinformatics
Publications - 16
Citations - 6158
Petra S. Langendijk-Genevaux is an academic researcher from Swiss Institute of Bioinformatics. The author has contributed to research in topics: PROSITE & UniProt. The author has an hindex of 12, co-authored 16 publications receiving 5781 citations. Previous affiliations of Petra S. Langendijk-Genevaux include University of Toulouse & University of Geneva.
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Journal ArticleDOI
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
Edouard de Castro,Christian J. A. Sigrist,Alexandre Gattiker,Virginie Bulliard,Petra S. Langendijk-Genevaux,Elisabeth Gasteiger,Amos Marc Bairoch,Nicolas Hulo +7 more
TL;DR: A new and improved version of the web-based tool for detecting PROSITE signature matches in protein sequences that makes use of ProRules—context-dependent annotation templates—to detect functional and structural intra-domain residues.
Journal ArticleDOI
PROSITE, a protein domain database for functional characterization and annotation
Christian J. A. Sigrist,Lorenzo Cerutti,Edouard de Castro,Petra S. Langendijk-Genevaux,Virginie Bulliard,Amos Marc Bairoch,Nicolas Hulo +6 more
TL;DR: AMSA, an annotated multiple sequence alignment format used to build a new generation of generalized profiles, the migration of ScanProsite to Vital-IT, a cluster of 633 CPUs, and the adoption of the Distributed Annotation System (DAS) to facilitate PROSITE data integration and interchange with other sources are described.
The Universal Protein Resource (UniProt) in 2010
Rolf Apweiler,Maria Jesus Martin,Claire O'Donovan,Michele Magrane,Yasmin Alam-Faruque,Ricardo Antunes,Daniel Barrell,Benoit Bely,M Bingley,David Binns,Lynette Bower,Paul Browne,WM Chan,E. Dimmer,Ruth Y. Eberhardt,A. Fedotov,Rebecca E. Foulger,John S. Garavelli,Rachael P. Huntley,Julius O.B. Jacobsen,M. Kleen,Kati Laiho,Rasko Leinonen,Duncan Legge,Quan Lin,W Liu,Jie Luo,Sandra Orchard,Samuel Patient,Diego Poggioli,Manuela Pruess,Matthew Corbett,G di Martino,M Donnelly,P van Rensburg,Amos Marc Bairoch,Lydie Bougueleret,Ioannis Xenarios,S Altairac,Andrea H. Auchincloss,Ghislaine Argoud-Puy,Kristian B. Axelsen,Delphine Baratin,M. C. Blatter,Brigitte Boeckmann,Jerven Bolleman,L. Bollondi,Emmanuel Boutet,SB Quintaje,Lionel Breuza,Alan Bridge,E. Decastro,L Ciapina,D Coral,Elisabeth Coudert,Isabelle Cusin,G Delbard,M Doche,Dolnide Dornevil,Paula Duek Roggli,Séverine Duvaud,Anne Estreicher,L Famiglietti,M Feuermann,Sebastien Gehant,N. Farriol-Mathis,Serenella Ferro,Elisabeth Gasteiger,Alain Gateau,Gerritsen,Arnaud Gos,Nadine Gruaz-Gumowski,Ursula Hinz,Chantal Hulo,Nicolas Hulo,J. James,S. Jimenez,Florence Jungo,T. Kappler,Guillaume Keller,Corinne Lachaize,L Lane-Guermonprez,Petra S. Langendijk-Genevaux,Lara,P Lemercier,Damien Lieberherr,Tdo Lima,Mangold,Xavier D. Martin,Patrick Masson,M. Moinat,Anne Morgat,Anaïs Mottaz,Salvo Paesano,Ivo Pedruzzi,Sandrine Pilbout,Pillet,Sylvain Poux,Monica Pozzato,Nicole Redaschi,Catherine Rivoire,Bernd Roechert,Maria Victoria Schneider,Christian J. A. Sigrist,K Sonesson,S Staehli,Eleanor J Stanley,Andre Stutz,Shyamala Sundaram,Michael Tognolli,Laure Verbregue,A-L Veuthey,L Yip,L Zuletta,Cathy H. Wu,Cecilia N. Arighi,Leslie Arminski,Winona C. Barker,Chuming Chen,Yingfei Chen,Z-Z Hu,Hongzhan Huang,Raja Mazumder,Peter B. McGarvey,Darren A. Natale,Jules Nchoutmboube,Natalia V. Petrova,N Subramanian,Baris E. Suzek,U. Ugochukwu,Sona Vasudevan,C. R. Vinayaka,LS Yeh,Jian Zhang +133 more
Journal ArticleDOI
The PROSITE database
Nicolas Hulo,Amos Marc Bairoch,Virginie Bulliard,Lorenzo Cerutti,Edouard de Castro,Petra S. Langendijk-Genevaux,Marco Pagni,Christian J. A. Sigrist +7 more
TL;DR: The PROSITE database consists of a large collection of biologically meaningful signatures that are described as patterns or profiles that provides useful biological information on the protein family, domain or functional site identified by the signature.
Journal ArticleDOI
New developments in the InterPro database
Nicola Mulder,Rolf Apweiler,Teresa K. Attwood,Amos Marc Bairoch,Alex Bateman,David Binns,Peer Bork,Virginie Buillard,Lorenzo Cerutti,Richard R. Copley,Emmanuel Courcelle,Ujjwal Das,Louise C. Daugherty,Mark Dibley,Robert D. Finn,Wolfgang Fleischmann,Julian Gough,Daniel H. Haft,Nicolas Hulo,Sarah Hunter,Daniel Kahn,Alexander Kanapin,Anish Kejariwal,Alberto Labarga,Petra S. Langendijk-Genevaux,David Lonsdale,Rodrigo Lopez,Ivica Letunic,Martin Madera,John Maslen,Craig McAnulla,Jennifer McDowall,Jaina Mistry,Alex L. Mitchell,Alex L. Mitchell,Anastasia N. Nikolskaya,Sandra Orchard,Christine A. Orengo,Robert Petryszak,Jeremy D. Selengut,Christian J. A. Sigrist,Paul Thomas,Franck Valentin,Derek Wilson,Cathy H. Wu,Corin Yeats +45 more
TL;DR: The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB, and there have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files.