P
Phil Chapman
Researcher at University of Manchester
Publications - 12
Citations - 320
Phil Chapman is an academic researcher from University of Manchester. The author has contributed to research in topics: Gene silencing & Software. The author has an hindex of 7, co-authored 11 publications receiving 204 citations.
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Journal ArticleDOI
Discovery of a first-in-class reversible DNMT1-selective inhibitor with improved tolerability and efficacy in acute myeloid leukemia.
Melissa B. Pappalardi,Kathryn Keenan,Mark Cockerill,Wendy A. Kellner,Alexandra Stowell,Christian S. Sherk,Kristen Wong,Sarath Pathuri,Jacques Briand,Michael Steidel,Phil Chapman,Arthur Groy,Ashley K. Wiseman,Charles F. McHugh,Nino Campobasso,Alan P. Graves,Emma E. Fairweather,Thilo Werner,Ali Raoof,Roger J. Butlin,Lourdes Rueda,John R. Horton,David T. Fosbenner,Cunyu Zhang,Jessica L. Handler,Morris Muliaditan,Makda Mebrahtu,Jon Paul Jaworski,Dean E. McNulty,Charlotte Burt,H. Christian Eberl,Amy N. Taylor,Thau F. Ho,Susan Merrihew,Shawn W. Foley,Anna Rutkowska,Mei Li,Stuart Paul Romeril,Kristin M. Goldberg,Xing Zhang,Christopher S. Kershaw,Marcus Bantscheff,Anthony J. Jurewicz,Elisabeth A. Minthorn,Paola Grandi,Mehul Patel,Andrew B. Benowitz,Helai P. Mohammad,Aidan G. Gilmartin,Rab K. Prinjha,Donald J. Ogilvie,Christopher L. Carpenter,Dirk A. Heerding,Stephen B. Baylin,Peter A. Jones,Xiaodong Cheng,Bryan W. King,Juan I. Luengo,Allan M. Jordan,Ian D. Waddell,Ryan G. Kruger,Michael T. McCabe +61 more
TL;DR: The discovery of GSK3685032 is reported, a potent first-in-class DNMT1-selective inhibitor that was shown via crystallographic studies to compete with the active-site loop ofDNMT1 for penetration into hemi-methylated DNA between two CpG base pairs.
Journal ArticleDOI
Software for the Integration of Multiomics Experiments in Bioconductor.
Marcel Ramos,Marcel Ramos,Lucas Schiffer,Angela Re,Rimsha Azhar,Azfar Basunia,Carmen Rodríguez,Tiffany Chan,Phil Chapman,Sean Davis,David Gomez-Cabrero,Aedín C. Culhane,Benjamin Haibe-Kains,Kasper D. Hansen,Hanish Kodali,Marie Stephie Louis,Arvind Singh Mer,Markus Riester,Martin Morgan,Vincent J. Carey,Vincent J. Carey,Levi Waldron +21 more
TL;DR: The MultiAssayExperiment Bioconductor package reduces major obstacles to efficient, scalable, and reproducible statistical analysis of multiomics data and enhances data science applications of multiple omics datasets.
Journal ArticleDOI
Differential gene expression between Zucker Fatty rats and Zucker Diabetic Fatty rats: a potential role for the immediate-early gene Egr-1 in regulation of beta cell proliferation.
TL;DR: It is suggested that reduced Egr-1 gene expression may contribute to decreased beta-cell proliferation and the consequent beta- cell failure observed in the later stages of type 2 diabetes.
Journal ArticleDOI
Discrepancies in Cancer Genomic Sequencing Highlight Opportunities for Driver Mutation Discovery
Andrew M Hudson,Tim Yates,Yaoyong Li,Eleanor W. Trotter,Shameem Fawdar,Phil Chapman,Paul Lorigan,Andrew V. Biankin,Crispin J. Miller,John Brognard +9 more
TL;DR: It is highlighted that cross-referencing between genomic databases is required to comprehensively assess genomic alterations in commonly used cell lines and that there are still significant opportunities to identify novel drivers of tumorigenesis in poorly sequenced areas of the exome.
Journal ArticleDOI
Recurrent MLK4 Loss-of-Function Mutations Suppress JNK Signaling to Promote Colon Tumorigenesis
Anna A. Marusiak,Natalie L. Stephenson,Hayeon Baik,Eleanor W. Trotter,Yaoyong Li,Karen Blyth,Susan M. Mason,Phil Chapman,Lorena A. Puto,Jon Read,Claire Brassington,Hannah Pollard,Christopher R. Phillips,Isabelle Green,Ross Overman,Matthew Collier,Ewelina Testoni,Crispin J. Miller,Tony Hunter,Owen J. Sansom,John Brognard +20 more
TL;DR: Acting to restore the function of MLK4 selectively induced the JNK pathway and its downstream targets, cJUN, ATF3, and the cyclin-dependent kinase inhibitors CDKN1A and CDKN2B found that it reduced cell viability, proliferation, and colony formation in vitro and delayed tumor growth in vivo.