Q
Qinghu Ren
Researcher at J. Craig Venter Institute
Publications - 51
Citations - 16889
Qinghu Ren is an academic researcher from J. Craig Venter Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 41, co-authored 48 publications receiving 15649 citations. Previous affiliations of Qinghu Ren include University of Rochester & University of Maryland, Baltimore.
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Journal ArticleDOI
Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity
TL;DR: The natural population metagenome had high sequence identity to most genes from the coastal model strains but diverged greatly from these genomes in multiple regions of atypical trinucleotide content that encoded diverse functions.
Journal ArticleDOI
High-throughput phenotypic characterization of Pseudomonas aeruginosa membrane transport genes.
Daniel A. Johnson,Sasha G. Tetu,Katherine Phillippy,Joan Chen,Qinghu Ren,Ian T. Paulsen,Ian T. Paulsen +6 more
TL;DR: This work utilized Biolog phenotype MicroArrays to identify phenotypes of gene knockout mutants in the opportunistic pathogen and versatile soil bacterium Pseudomonas aeruginosa in a relatively high-throughput fashion and showed the bioinformatic predictions to be largely correct in 22 out of 27 cases.
Journal ArticleDOI
Large-scale comparative genomic analyses of cytoplasmic membrane transport systems in prokaryotes.
Qinghu Ren,Ian T. Paulsen +1 more
TL;DR: Hierarchical clustering of phylogenetic profiles of transporter families, which are derived from the presence or absence of a certain transporter family, showed distinct clustering patterns for obligate intracellular organisms, plant/soil-associated microbes and autotrophs.
Journal ArticleDOI
Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus.
Jonathan H. Badger,Timothy R. Hoover,Yves V. Brun,Ronald M. Weiner,Michael T. Laub,Gladys Alexandre,Jan Mrázek,Qinghu Ren,Ian T. Paulsen,Karen E. Nelson,Hoda Khouri,Diana Radune,Julia E. Sosa,Robert J. Dodson,Steven A. Sullivan,M. J. Rosovitz,Ramana Madupu,Lauren M. Brinkac,A. Scott Durkin,Sean C. Daugherty,Sagar Kothari,Michelle G. Giglio,Liwei Zhou,Daniel H. Haft,Jeremy D. Selengut,Tanja M. Davidsen,Qi Yang,Nikhat Zafar,Naomi L. Ward +28 more
TL;DR: The genome sequence of Hyphomonas neptunium, a marine member of the dimorphic prosthecate bacteria, is described, which indicates that this organism shares more genes with C. crescentus than it does with Silicibacter pomeroyi, and will provide an important resource for the study of other interesting biological processes including chromosome segregation, polar growth, and cell aging.
Journal ArticleDOI
Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents
Julie C. Dunning Hotopp,Mingqun Lin,Ramana Madupu,Jonathan Crabtree,Samuel V. Angiuoli,Jonathan A. Eisen,Rekha Seshadri,Qinghu Ren,Martin Wu,Teresa Utterback,Shannon Smith,Matthew R. Lewis,Hoda Khouri,Chunbin Zhang,Hua Niu,Quan Lin,Norio Ohashi,Ning Zhi,William C. Nelson,Lauren M. Brinkac,Robert J. Dodson,M. J. Rosovitz,Jaideep P. Sundaram,Sean C. Daugherty,Tanja M. Davidsen,Anthony S. Durkin,Michelle L. Gwinn,Daniel H. Haft,Jeremy D. Selengut,Steven A. Sullivan,Nikhat Zafar,Liwei Zhou,Faiza H. Benahmed,Heather Forberger,Rebecca A. Halpin,Stephanie Mulligan,Jeffrey M. Robinson,Owen White,Yasuko Rikihisa,Hervé Tettelin +39 more
TL;DR: This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.