R
Rekha Seshadri
Researcher at Joint Genome Institute
Publications - 70
Citations - 9698
Rekha Seshadri is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Genome & Metagenomics. The author has an hindex of 28, co-authored 65 publications receiving 8342 citations. Previous affiliations of Rekha Seshadri include Lawrence Berkeley National Laboratory & J. Craig Venter Institute.
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Journal ArticleDOI
Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis
Ian T. Paulsen,L. Banerjei,Garry S. A. Myers,Karen E. Nelson,Rekha Seshadri,Timothy D. Read,Derrick E. Fouts,Jonathan A. Eisen,Steven R. Gill,John F. Heidelberg,H Tettelin,Robert J. Dodson,Lowell Umayam,Lauren M. Brinkac,Maureen J. Beanan,Sean C. Daugherty,Robert T. DeBoy,Scott Durkin,James F. Kolonay,R. Madupu,William C. Nelson,Jessica Vamathevan,Bao Tran,J. Upton,T. Hansen,Jyoti Shetty,H. Khouri,T. Utterback,Diana Radune,K. A. Ketchum,Brian Dougherty,Claire M. Fraser +31 more
TL;DR: The complete genome sequence of Enterococcus faecalisV583, a vancomycin-resistant clinical isolate, revealed that more than a quarter of the genome consists of probable mobile or foreign DNA, which probably contributed to the rapid acquisition and dissemination of drug resistance in the enterococci.
Journal ArticleDOI
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.
John F. Heidelberg,Ian T. Paulsen,Karen E. Nelson,Eric Gaidos,Eric Gaidos,William C. Nelson,Timothy D. Read,Jonathan A. Eisen,Rekha Seshadri,Naomi L. Ward,Barbara A. Methé,Rebecca A. Clayton,Terry E. Meyer,A. I. Tsapin,James Scott,Maureen J. Beanan,Lauren M. Brinkac,Sean C. Daugherty,Robert T. DeBoy,Robert J. Dodson,A. Scott Durkin,Daniel H. Haft,James F. Kolonay,Ramana Madupu,Jeremy Peterson,Lowell Umayam,Owen White,Alex M. Wolf,Jessica Vamathevan,Janice Weidman,Marjorie Impraim,K. Lee,Kristy Berry,Chris Lee,Jacob L. Mueller,Hoda Khouri,John Gill,T. Utterback,Lisa McDonald,Tamara Feldblyum,Hamilton O. Smith,J. Craig Venter,Kenneth H. Nealson,Kenneth H. Nealson,Claire M. Fraser +44 more
TL;DR: This genome sequence represents a critical step in the elucidation of the pathways for reduction (and bioremediation) of pollutants such as uranium (U) and chromium (Cr), and offers a starting point for defining this organism's complex electron transport systems and metal ion–reducing capabilities.
Journal ArticleDOI
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.
I-Min A. Chen,Ken Chu,Krishna Palaniappan,Manoj Pillay,Anna Ratner,Jinghua Huang,Marcel Huntemann,Neha Varghese,James R. White,Rekha Seshadri,Tatyana Smirnova,Edward Kirton,Sean P. Jungbluth,Tanja Woyke,Emiley A. Eloe-Fadrosh,Natalia Ivanova,Nikos C. Kyrpides +16 more
TL;DR: The Integrated Microbial Genomes & Microbiomes system v.5.0 has a new and more powerful genome search feature, new statistical tools, and supports metagenome binning.
Journal ArticleDOI
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5
Ian T. Paulsen,Caroline M. Press,Jacques Ravel,Donald Y. Kobayashi,Garry S. A. Myers,Dmitri V. Mavrodi,Robert T. DeBoy,Rekha Seshadri,Qinghu Ren,Ramana Madupu,Robert J. Dodson,A. Scott Durkin,Lauren M. Brinkac,Sean C. Daugherty,Stephen A Sullivan,M. J. Rosovitz,Michelle L. Gwinn,Liwei Zhou,Davd J Schneider,Samuel W. Cartinhour,William C. Nelson,Janice Weidman,Kisha Watkins,Kevin Tran,Hoda Khouri,Elizabeth A. Pierson,Leland S. Pierson,Linda S. Thomashow,Joyce E. Loper +28 more
TL;DR: Various features that contribute to its commensal lifestyle on plants, including broad catabolic and transport capabilities for utilizing plant-derived compounds, the apparent ability to use a diversity of iron siderophores, detoxification systems to protect from oxidative stress, and the lack of a type III secretion system and toxins found in related pathogens are identified.
Journal ArticleDOI
The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough
John F. Heidelberg,Rekha Seshadri,Shelley A. Haveman,Christopher L. Hemme,Ian T. Paulsen,James F. Kolonay,Jonathan A. Eisen,Naomi L. Ward,Barbara A. Methé,Lauren M. Brinkac,Sean C. Daugherty,Robert T. DeBoy,Robert J. Dodson,A. Scott Durkin,Ramana Madupu,William C. Nelson,Steven A. Sullivan,Derrick E. Fouts,Daniel H. Haft,Jeremy D. Selengut,Jeremy Peterson,Tanja M. Davidsen,Nikhat Zafar,Liwei Zhou,Diana Radune,George Dimitrov,Mark Hance,Kevin Tran,Hoda Khouri,John Gill,T. Utterback,Tamara Feldblyum,Judy D. Wall,Gerrit Voordouw,Claire M. Fraser +34 more
TL;DR: The relative arrangement of genes encoding enzymes for energy transduction, together with inferred cellular location of the enzymes, provides a basis for proposing an expansion to the 'hydrogen-cycling' model for increasing energy efficiency in this bacterium.