R
Ramunas Stepanauskas
Researcher at Bigelow Laboratory For Ocean Sciences
Publications - 158
Citations - 17527
Ramunas Stepanauskas is an academic researcher from Bigelow Laboratory For Ocean Sciences. The author has contributed to research in topics: Genome & Metagenomics. The author has an hindex of 59, co-authored 146 publications receiving 14297 citations. Previous affiliations of Ramunas Stepanauskas include University of Georgia & Lund University.
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Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. Bowers,Nikos C. Kyrpides,Ramunas Stepanauskas,Miranda Harmon-Smith,Devin F. R. Doud,T. B. K. Reddy,Frederik Schulz,Jessica K. Jarett,Adam R. Rivers,Emiley A. Eloe-Fadrosh,Susannah G. Tringe,Natalia Ivanova,Alex Copeland,Alicia Clum,Eric D. Becraft,Rex R. Malmstrom,Bruce W. Birren,Mircea Podar,Peer Bork,George M. Weinstock,George M. Garrity,Jeremy A. Dodsworth,Shibu Yooseph,Granger G. Sutton,Frank Oliver Glöckner,Jack A. Gilbert,William C. Nelson,Steven J. Hallam,Sean P. Jungbluth,Thijs J. G. Ettema,Scott Tighe,Konstantinos T. Konstantinidis,Wen Tso Liu,Brett J. Baker,Thomas Rattei,Jonathan A. Eisen,Brian P. Hedlund,Katherine D. McMahon,Noah Fierer,Rob Knight,Robert D. Finn,Guy Cochrane,Ilene Karsch-Mizrachi,Gene W. Tyson,Christian Rinke,Alla Lapidus,Folker Meyer,Pelin Yilmaz,Donovan H. Parks,A. Murat Eren,Lynn M. Schriml,Jillian F. Banfield,Philip Hugenholtz,Tanja Woyke +53 more
TL;DR: This research presents a new probabilistic approach to estimating the response of the immune system to EMTs using a simple, straightforward, and scalable approach called “spot-spot analysis”.
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Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population.
Jessica M. Labonté,Erin K. Field,Maggie C. Y. Lau,Dylan Chivian,Esta van Heerden,K. Eric Wommack,Thomas L. Kieft,Tullis C. Onstott,Ramunas Stepanauskas +8 more
TL;DR: Single cell genomics indicates that recombination, HGT and viral infections are prevalent evolutionary events in the studied population of microorganisms inhabiting a highly stable deep subsurface environment.
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Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters.
TL;DR: The authors used a composition-heterogeneous Bayesian phylogenomic model to resolve four uncultivated cells affiliated with the ecologically relevant Roseobacter clade into a new clade.
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Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount
Erin K. Field,Alexander Sczyrba,Audrey Lyman,Christopher C. Harris,Tanja Woyke,Ramunas Stepanauskas,David Emerson +6 more
TL;DR: Comparative genomics of 23 phylogenetically diverse single amplified genomes (SAGs) and two isolates indicate niche specialization among the Zetaproteobacteria may be largely due to oxygen tolerance and nitrogen transformation capabilities, and a novel cluster of redox-related genes was found to be conserved in 10 SAGs as well as in the isolates warranting further investigation.
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Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling
Kenneth Wasmund,Kenneth Wasmund,Myriel Cooper,Lars Schreiber,Karen G. Lloyd,Brett J. Baker,Dorthe Groth Petersen,Bo Barker Jørgensen,Ramunas Stepanauskas,Richard Reinhardt,Andreas Schramm,Alexander Loy,Lorenz Adrian +12 more
TL;DR: In this paper, a single DEH cell (DEH-C11) with a 16S rRNA gene that was affiliated with a diverse cluster of 16S RRNA gene sequences prevalent in marine sediments was obtained from sediments of Aarhus Bay, Denmark.