R
Ron P. Dirks
Researcher at Radboud University Nijmegen
Publications - 83
Citations - 2787
Ron P. Dirks is an academic researcher from Radboud University Nijmegen. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 23, co-authored 76 publications receiving 2377 citations. Previous affiliations of Ron P. Dirks include Leiden University.
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Journal ArticleDOI
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
Freek J. Vonk,Freek J. Vonk,Freek J. Vonk,Nicholas R. Casewell,Nicholas R. Casewell,Christiaan V. Henkel,Alysha Heimberg,Hans J. Jansen,Ryan J.R. McCleary,Harald M. E. Kerkkamp,Rutger A. Vos,Isabel Guerreiro,Juan J. Calvete,Wolfgang Wüster,Anthony E. Woods,Jessica M. Logan,Robert A. Harrison,Todd A. Castoe,Todd A. Castoe,A. P. Jason de Koning,A. P. Jason de Koning,David D. Pollock,Mark Yandell,Diego Calderon,Camila Renjifo,Rachel B. Currier,David Salgado,David Salgado,Davinia Pla,Libia Sanz,Asad S. Hyder,José M. C. Ribeiro,Jan W. Arntzen,Guido van den Thillart,Marten Boetzer,Walter Pirovano,Ron P. Dirks,Herman P. Spaink,Denis Duboule,Edwina McGlinn,R. Manjunatha Kini,Michael K. Richardson +41 more
TL;DR: It is shown that regulatory components of the venom secretory system may have evolved from a pancreatic origin and that venom toxin genes were co-opted by distinct genomic mechanisms, which provides insight into mechanisms of protein evolution under strong selection.
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A DNAJB Chaperone Subfamily with HDAC-Dependent Activities Suppresses Toxic Protein Aggregation
Jurre Hageman,Maria A. Rujano,Maria A.W.H. van Waarde,Vaishali Kakkar,Ron P. Dirks,Natalia Govorukhina,Henderika M.J. Oosterveld-Hut,Nicolette H. Lubsen,Harm H. Kampinga +8 more
TL;DR: Combined data provide a functional link between HDACs and DNAJs in suppressing cytotoxic protein aggregation and DNAJB8 is (de)acetylated at two conserved C-terminal lysines that are not involved in substrate binding, but do play a role in suppressing protein aggregation.
Journal ArticleDOI
Primitive duplicate Hox clusters in the European eel's genome.
Christiaan V. Henkel,Erik Burgerhout,Daniëlle L. de Wijze,Ron P. Dirks,Yuki Minegishi,Hans J. Jansen,Herman P. Spaink,Sylvie Dufour,Finn-Arne Weltzien,Katsumi Tsukamoto,Guido van den Thillart +10 more
TL;DR: It is shown that unlike any other teleost fish, the eel retains fully populated, duplicate Hox clusters, which originated at the teleost-specific genome duplication, and all copies are expressed in early embryos.
Journal ArticleDOI
A High-Throughput Screen for Tuberculosis Progression
Ralph Carvalho,Jan de Sonneville,Oliver W. Stockhammer,Nigel D. L. Savage,Wouter J. Veneman,Tom H. M. Ottenhoff,Ron P. Dirks,Annemarie H. Meijer,Herman P. Spaink +8 more
TL;DR: In this paper, the authors used the zebrafish Mycobacterium marinum infection model to study the progression of tuberculosis in early embryos and visual flow screening of late-stage larvae.
Journal ArticleDOI
Urochordate betagamma-crystallin and the evolutionary origin of the vertebrate eye lens.
Sebastian M. Shimeld,Andrew G. Purkiss,Ron P. Dirks,Orval A. Bateman,Christine Slingsby,Nicolette H. Lubsen +5 more
TL;DR: The conservation of the regulatory hierarchy controlling βγ-crystallin expression between organisms with and without a lens shows that the evolutionary origin of the lens was based on co-option of pre-existing regulatory circuits controlling the expression of a key structural gene in a primitive light-sensing system.