R
Rupali Chopra
Researcher at Institute of Genomics and Integrative Biology
Publications - 4
Citations - 472
Rupali Chopra is an academic researcher from Institute of Genomics and Integrative Biology. The author has contributed to research in topics: Genetic divergence & International HapMap Project. The author has an hindex of 4, co-authored 4 publications receiving 444 citations.
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Journal ArticleDOI
Genetic landscape of the people of India: A canvas for disease gene exploration
Samir K. Brahmachari,Partha P. Majumder,Mitali Mukerji,Saman Habib,Debasis Dash,Kunal Ray,Samira Bahl,Lalji Singh,Abhay Sharma,Susanta Roychoudhury,Giriraj R. Chandak,Kumarasamy Thangaraj,Devendra Parmar,Shantanu Sengupta,Dwaipayan Bharadwaj,Srikanta Kumar Rath,Jagmohan Singh,Ganga Nath Jha,Komal Virdi,V. R. Rao,Swapnil Sinha,Ashok K. Singh,Amit Kumar Mitra,Shrawan K. Mishra,Qadar Pasha,Sridhar Sivasubbu,Rajesh Pandey,Aradhita Baral,Prashant Singh,Amitabh Sharma,Jitender Kumar,Tsering Stobdan,Yasha Bhasin,Chitra Chauhan,Ashiq Hussain,Elyanambi Sundaramoorthy,Suchita Singh,Arun Bandyopadhyay,Krishanu Dasgupta,A. K. Reddy,Charles J. Spurgeon,M. Mohd Idris,Vinay K. Khanna,Alok Dhawan,Mohini Anand,Ravi Shankar,R. S. Bharti,Madhu Singh,Arvind P. Singh,Anwar J. Khan,Parag P. Shah,A. B. Pant,Rupinder Kaur,Kamlesh Bisht,Ashok Kumar,Victor Rajamanickam,Eugene Wilson,Antony Thangadurai,Pankaj Jha,Mahua Maulik,Neelam Makhija,Abdur Rahim,Sangeeta Sharma,Rupali Chopra,Pooja Rana,Manickam Chidambaram,Arindam Maitra,Ruchi Chawla,Suruchika Soni,Preeti Khurana,Mohamed Nadeem Khan,Sushanta Das Sutar,Amit Tuteja,K. Narayansamy,Rachna Shukla,S. Prakash,Swapna Mahurkar,K. Radha Mani,J. Hemavathi,Seema Bhaskar,Pankaj Khanna,G. S. Ramalakshmi,Shalini Mani Tripathi,Nikita Thakur,Balaram Ghosh,Ritushree Kukreti,Taruna Madan,Ranjana Verma,G. Sudheer,Anubha Mahajan,Sreenivas Chavali,Rubina Tabassum,Sandeep Grover,Meenal Gupta,Jyotsna Batra,Amrendra Kumar,Abdoulazim Nejatizadeh,Mudit Vaid,Swapan K Das,Shilpy Sharma,Mamta Sharma,Rajshekhar Chatterjee,Jinny A. Paul,Pragya Srivastava,Charu Rajput,Uma Mittal,Mridula Singh,Manoj Hariharan,S.K. Das,Keya Chaudhuri,Mainak Sengupta,Moulinath Acharya,Ashima Bhattacharyya,A Saha,Arindam Biswas,Moumita Chaki,Arnab Gupta,Saibal Mukherjee,Suddhasil Mookherjee,Ishita Chattopadhyay,Taraswi Banerjee,Meenakshi Chakravorty,Chaitali Misra,Gourish Monadal,Shiladitya Sengupta,Dipanjana Dutta De,Swati Bajaj,Ishani Deb,Arunava Banerjee,Rajdeep Chowdhury,Debalina Banerjee,Deepak Kumar,Sumit Ranjan Das,Shrish Tiwari,Anshu Bharadwaj,Ikhlak Ahmed,Sumera Parveen,Nivedita Singh,Dipayan Dasgupta,Siddharth Singh Bisht,Sangeeta Khanna,Rashmi Rajput,Biswaroop Ghosh,Naveen Kumar,Amit Kumar Chaurasia,James Kappukalayil Abraham,Amit Sinha,Vinod Scaria,Tavpritesh Sethi,A. Mandal,Arijit Mukhopadhyay +150 more
TL;DR: High levels of genetic divergence are observed between groups of populations that cluster largely on the basis of ethnicity and language in diverse populations of India.
Journal ArticleDOI
The Indian Genome Variation database (IGVdb): a project overview
Samir K. Brahmachari,Lalji Singh,Abhay Sharma,Mitali Mukerji,Kunal Ray,Susanta Roychoudhury,Giriraj R. Chandak,Kumarasamy Thangaraj,Saman Habib,Devendra Parmar,Partha P. Majumder,Shantanu Sengupta,Dwaipayan Bharadwaj,Debasis Dash,Srikanta Kumar Rath,Ravi Shankar,Jagmohan Singh,Komal Virdi,Samira Bahl,V. R. Rao,Swapnil Sinha,Ashok K. Singh,Amit Kumar Mitra,Shrawan K. Mishra,B. R. K. Shukla,Qadar Pasha,Souvik Maiti,Amitabh Sharma,Jitender Kumar,Aarif Ahsan,Tsering Stobdan,Chitra Chauhan,Shivali Malhotra,Ajay Vidhani,S. Siva,Aradhita Baral,Rajesh Pandey,Ravishankar Roy,Mridula Singh,Suchita Singh,Nitin Maurya,Arun Bandyopadhyay,Ganga Nath Jha,Somnath Dutta,Gautam Ghosh,Tufan Naiya,Manoj Jain,J. P. Srivatava,J. R. Gupta,Vinay Khanna,Alok Dhawan,Mohini Anand,R. S. Bharti,Madhu Singh,Arvind P. Singh,Anwar J. Khan,Kamlesh Bisht,Ashok Kumar,Balaram Ghosh,Swapan K Das,Taruna Madan,Ranjana Verma,Uma Mittal,Anubha Mahajan,Sreenivas Chavali,Rubina Tabassum,Vijaya Banerjee,Jyotsna Batra,Rana Nagarkatti,Shilpy Sharma,Mamta Sharma,Rajshekhar Chatterjee,Jinny A. Paul,Pragya Srivastava,Rupali Chopra,Ankur Saxena,Charu Rajput,Prashant Singh,Mudit Vaid,S.K. Das,Keya Chaudhuri,Rukhsana Chowdhury,Arijit Mukhopadhyay,Moulinath Acharya,Ashima Bhattacharyya,A Saha,Arindam Biswas,Moumita Chaki,Arnab Gupta,Saibal Mukherjee,Suddhasil Mookherjee,Ishita Chattopadhyay,Taraswi Banerjee,Meenakshi Chakravorty,Chaitali Misra,Gourish Monadal,Shiladitya Sengupta,Ishani Deb,Arunava Banerjee +98 more
TL;DR: The Indian Genome Variation (IGV) consortium as discussed by the authors is the first large-scale comprehensive study of the structure of the Indian population with wide-reaching implications, which aims to provide data on validated SNPs and repeats, both novel and reported, along with gene duplications, in over a thousand genes, in 15,000 individuals drawn from Indian subpopulations.
Consortium IGVThe Indian Genome Variation database (IGVdb): a project overview. Hum Genet 118:1-11
Samir K. Brahmachari,Lalji Singh,Amitabh Sharma,Mitali Mukerji,Kunal Ray,Susanta Roychoudhury,Giriraj R. Chandak,Kumarasamy Thangaraj,Saman Habib,Devendra Parmar,Partha P. Majumder,Dwaipayan Bharadwaj,Debasis Dash,S. K. Rath,Ravi Shankar,Jagmohan Singh,Komal Virdi,Samira Bahl,V. R. Rao,Rath Sk,Ashok K. Singh,Amit Kumar Mitra,Shrawan K. Mishra,B. R. K. Shukla,Shantanu Sengupta,Qadar Pasha,Souvik Maiti,Jitender Kumar,Aarif Ahsan,Tsering Stobdan,Chitra Chauhan,Shivali Malhotra,A. Vidbani,S. Siva,Aradhita Baral,Rajesh Pandey,Ravishankar Roy,Mridula Singh,Suchita Singh,Nitin Maurya,Arun Bandyopadhyay,Ganga Nath Jha,Somnath Dutta,Gautam Ghosh,Tufan Naiya,M. Jain,Swapnil Sinha,J. P. Srivatava,J. R. Gupta,V. K. Khanna,Alok Dhawan,Mohini Anand,R. S. Bharti,Arvind P. Singh,Khan Aj,Kamlesh Bisht,Ashok Kumar,Balaram Ghosh,S.K. Das,Taruna Madan,Ranjana Verma,Uma Mittal,Anubha Mahajan,Sreenivas Chavali,Rubina Tabassum,Vijaya Banerjee,Jyotsna Batra,Rana Nagarkatti,Sangeeta Sharma,Mamta Sharma,Rajshekhar Chatterjee,Paul Ja,Pragya Srivastava,Rupali Chopra,Ankur Saxena,Charu Rajput,Prashant Singh,Mudit Vaid,Das Sk,Keya Chaudhuri,Rukhsana Chowdhury,Arijit Mukhopadhyay,Moulinath Acharya,Ashima Bhattacharyya,A Saha,Arindam Biswas,Moumita Chaki,Arnab Gupta,Saibal Mukherjee,Suddhasil Mookherjee,Ishita Chattopadhyay,Taraswi Banerjee,Meenakshi Chakravorty,Chaitali Misra,Gourish Monadal,Ishani Deb,Arunava Banerjee,A. Ghosh,K. Paul,Priyanka De,Mishra Sk,Rachna Shukla,G. S. Ramalakshmi,Pankaj Khanna,M. Mohd Idris,K. R. Mani,Seema Bhaskar,Swapna Mahurkar,Shalini Mani Tripathi,V. N. S. Prathyusha,V. P. Kolla,J. Hemavathi,D. Saha,D. Agarwal,Rupinder Kaur,Manoj Hariharan,Siddharth Singh Bisht,Dipayan Dasgupta,Sangeeta Khanna,R. Basu,B. Das,J. Mukherjee,P. Banerjee,B. Saba,S. R. Moquim,N. Kwarta,M. Kumar,D. Sinha,S. Tewari,Vinay K. Khanna,B. Singh,G. P. S. Raghava,Neelam Makhija,Abdur Rahim,K. Narayanasami,Arindam Maitra,Ruchi Chawla,S. Som,Preeti Khurana,S. Das Sutar,Amit Tuteja,M. N. Khan,A. Chandragupta,Pooja Rana,Manickam Chidambaram,B. C. Mishra,H. Kulkarni,O. P. Aggarwal +147 more
The Indian Genome Variation Consortium The Indian Genome Variation database (IGVdb): a project overview
Samir K. Brahmachari,Lalji Singh,Abhay Sharma,Mitali Mukerji,Kunal Ray,Susanta Roychoudhury,Giriraj R. Chandak,Kumarasamy Thangaraj,Saman Habib,Devendra Parmar,Partha P. Majumder,Shantanu Sengupta,Dwaipayan Bharadwaj,Debasis Dash,Srikanta K. Rath,Ravi Shankar,Jagmohan Singh,Komal Virdi,Samira Bahl,V. R. Rao,Srikanta Rath,Swapnil Sinha,Ashok K. Singh,Amit Kumar Mitra,Shrawan K. Mishra,B. R. K. Shukla,Qadar Pasha,Souvik Maiti,Amitabh Sharma,Jitender Kumar,Aarif Ahsan,Tsering Stobdan,Chitra Chauhan,Shivali Malhotra,Ajay Vidhani,S. Siva,Aradhita Baral,Rajesh Pandey,Ravishankar Roy,Mridula Singh,Suchita Singh,Nitin Maurya,Arun Bandyopadhyay,Ganga Nath Jha,Somnath Dutta,Gautam Ghosh,Tufan Naiya,Manoj Jain Ccmb,J. P. Srivatava,J. R. Gupta,Vinay K. Khanna,Alok Dhawan,Mohini Anand,R. S. Bharti,Madhu Singh,Arvind P. Singh,Anwar J. Khan,Kamlesh Bisht,Ashok Kumar,Balaram Ghosh,Swapan K Das,Taruna Madan,Ranjana Verma,Uma Mittal,Anubha Mahajan,Sreenivas Chavali,Rubina Tabassum,Vijaya Banerjee,Jyotsna Batra,Rana Nagarkatti,Shilpy Sharma,Mamta Sharma,Rajshekhar Chatterjee,Jinny A. Paul,Pragya Srivastava,Rupali Chopra,Ankur Saxena,Charu Rajput,Prashant Singh,Mudit Vaid,S.K. Das,Keya Chaudhuri,Rukhsana Chowdhury,Arijit Mukhopadhyay,Moulinath Acharya,Ashima Bhattacharyya,A Saha,Arindam Biswas,Moumita Chaki,Arnab Gupta,Saibal Mukherjee,Suddhasil Mookherjee,Ishita Chattopadhyay,Taraswi Banerjee,Meenakshi Chakravorty,Chaitali Misra,Gourish Monadal,Shiladitya Sengupta,Ishani Deb,Arunava Banerjee,Rajdeep Chowdhury,Amalendu Ghosh,Kalidas Paul,Priyanka De,Sumita Mishra,Rachna Shukla,G. S. Ramalakshmi,Pankaj Khanna,M. Mohd Idris,K. Radha Mani,Seema Bhaskar,Swapna Mahurkar,Shalini Mani Tripathi,V. N. S. Prathyusha,V. Prasad Kolla,J. Hemavathi,Nikita Thakur,Deepa Agarwal,Rupinder Kaur,Manoj Hariharan,Siddharth Singh Bisht,Dipayan Dasgupta,Sangeeta Khanna,Ranjan Basu,Biswajit Das,Shuvankar Mukherjee,Jhuma Mukherjee,Debasish Saha,Pallab Banerjee,Bijoyesh Saha,Anirban Chatterjee,S. R. Moquim,Navneet Kwarta,Manish Kumar,Debkumar Sinha,Shrish Tewari,A. Dhawan,V. K. Khanna,Balvinder Singh,G. P. S. Raghava,Neelam Makhija,Abdur Rahim,K. Narayanasami,Arindam Maitra,Sangeeta Sharma,Ruchi Chawla,Suruchika Soni,Preeti Khurana,Sushanta Das Sutar,Amit Tuteja,Mohd Nadeem Khan,Abhishek Chandragupta,Pooja Rana,Manickam Chidambaram,Bipin C. Mishra,Hemant Kulkarni,O. P. Aggarwal +156 more
TL;DR: The structure of the IGV project is revealed highlighting its various aspects like genesis, objectives, strategies for selection of genes, identification of the Indian subpopulations, collection of samples and discovery and validation of genetic markers, data analysis and monitoring as well as the project’s data release policy.