S
S.J. Coleman
Researcher at Colorado State University
Publications - 31
Citations - 2397
S.J. Coleman is an academic researcher from Colorado State University. The author has contributed to research in topics: Gene & MRNA Sequencing. The author has an hindex of 10, co-authored 31 publications receiving 2132 citations. Previous affiliations of S.J. Coleman include University of Kentucky & University of North Carolina at Chapel Hill.
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Journal ArticleDOI
MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
Kai Wang,Darshan Singh,Zheng Zeng,S.J. Coleman,Yan Huang,Gleb L. Savich,Xiaping He,Piotr A. Mieczkowski,Sara A. Grimm,Charles M. Perou,James N. MacLeod,Derek Y. Chiang,Jan F. Prins,Jinze Liu +13 more
TL;DR: A second generation splice detection algorithm, MapSplice, whose focus is high sensitivity and specificity in the detection of splices as well as CPU and memory efficiency is introduced, which indicates that Map Splice is a highly accurate algorithm for the alignment of RNA-seq reads to splice junctions.
Journal ArticleDOI
Genome sequence, comparative analysis, and population genetics of the domestic horse.
Claire M. Wade,Elena Giulotto,Snaevar Sigurdsson,Monica Zoli,Sante Gnerre,Freyja Imsland,Teri L. Lear,David L. Adelson,Ernest Bailey,Rebecca R. Bellone,Helmut Blöcker,Ottmar Distl,Robert C. Edgar,Manuel Garber,Tosso Leeb,Evan Mauceli,James N. MacLeod,Maria Cecilia T. Penedo,Joy M. Raison,Ted Sharpe,J. Vogel,Leif Andersson,Douglas F. Antczak,Tara Biagi,Matthew M. Binns,Bhanu P. Chowdhary,S.J. Coleman,G. Della Valle,Sarah Fryc,Gérard Guérin,T. Hasegawa,Emmeline W. Hill,Jerzy Jurka,Anna Kiialainen,Gabriella Lindgren,Jinze Liu,Elisa Magnani,James R. Mickelson,James D. Murray,Solomon G. Nergadze,Robert C. Onofrio,S. Pedroni,M. F. Piras,Terje Raudsepp,Mariano Rocchi,K. H. Røed,Oliver A. Ryder,S. Searle,Loren C. Skow,June E Swinburne,Ann-Christine Syvänen,Teruaki Tozaki,Stephanie J. Valberg,Mark Vaudin,Jared White,Michael C. Zody,Eric S. Lander,Kerstin Lindblad-Toh +57 more
TL;DR: The analysis reveals an evolutionarily new centromere on equine chromosome 11 that displays properties of an immature but fully functioning Centromere and is devoid of centromeric satellite sequence, suggesting thatCentromeric function may arise before satellite repeat accumulation.
Journal ArticleDOI
Determinants and implications of mRNA poly(A) tail size--does this protein make my tail look big?
TL;DR: The goal of this review is to encourage readers to view the poly(A) tail as a dynamic, changeable aspect of a transcript rather than a simple static entity that marks the 3' end of an mRNA.
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Genome-Wide Association Study among Four Horse Breeds Identifies a Common Haplotype Associated with In Vitro CD3+ T Cell Susceptibility/Resistance to Equine Arteritis Virus Infection
Yun Young Go,Ernest Bailey,Deborah Cook,S.J. Coleman,James N. MacLeod,Kuey-Chu Chen,Peter J. Timoney,Udeni B. R. Balasuriya +7 more
TL;DR: This is the first genome-wide association study of an equine infectious disease and the first GWAS of equine viral arteritis, demonstrating a strong association of genetic markers with the trait, representing de facto proof that the trait is under genetic control.
Journal ArticleDOI
Structural annotation of equine protein‐coding genes determined by mRNA sequencing
S.J. Coleman,Zheng Zeng,Kai Wang,Shujun Luo,I. Khrebtukova,Michael J. Mienaltowski,G. P. Schroth,Jinze Liu,James N. MacLeod +8 more
TL;DR: Gene ontology annotation was used to compare the functional and structural categories of genes expressed in either a tissue-restricted pattern or broadly across all tissue samples and to help refine structural annotation of equine protein-coding genes.