V
Victor Ruotti
Researcher at Morgridge Institute for Research
Publications - 18
Citations - 20761
Victor Ruotti is an academic researcher from Morgridge Institute for Research. The author has contributed to research in topics: Reprogramming & Induced pluripotent stem cell. The author has an hindex of 14, co-authored 15 publications receiving 19308 citations. Previous affiliations of Victor Ruotti include Medical College of Wisconsin & University of Wisconsin-Madison.
Papers
More filters
Human DNA methylomes at base resolution show widespread epigenomic
Mattia Pelizzola,Robert H. Dowen,R. David Hawkins,Gary C. Hon,Julian Tonti-Filippini,Joseph R. Nery,Leonard K. Lee,Zhen Ye,Que-Minh Ngo,Lee Edsall,Jessica Antosiewicz-Bourget,Ronald M. Stewart,Victor Ruotti,A. Harvey Millar,James A. Thomson,Bing Ren,Joseph R. Ecker +16 more
TL;DR: The first genome-wide, single-base-resolution maps of methylated cytosine methylation in a mammalian genome are presented, from both human embryonic stem cells and fetal fibroblasts, along with comparative analysis of messenger RNA and small RNA components of the transcriptome, several histone modifications, and sites of DNA–protein interaction for several key regulatory factors.
Journal ArticleDOI
Induced Pluripotent Stem Cell Lines Derived From Human Somatic Cells
Junying Yu,Maxim A. Vodyanik,Kim Smuga-Otto,Jessica Antosiewicz-Bourget,Jennifer L. Frane,Shulan Tian,Jeff Nie,Gudrun A. Jonsdottir,Victor Ruotti,Ron Stewart,Igor I. Slukvin,James A. Thomson +11 more
TL;DR: Somatic cell nuclear transfer as discussed by the authors permits transacting factors resident in the mammalian oocyte to reprogram somatic cell nuclei to an undifferentiated state, which is called epigenetic activation.
Journal ArticleDOI
EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments
Ning Leng,John A. Dawson,James A. Thomson,Victor Ruotti,Anna I. Rissman,Bart M. G. Smits,Jill D. Haag,Michael N. Gould,Ron Stewart,Christina Kendziorski +9 more
TL;DR: Kendzior et al. as mentioned in this paper developed EBSeq for identifying differentially expressed (DE) genes and their corresponding isoforms on a genome-wide scale using RNA-seq experiments.
Journal ArticleDOI
ProMoST (Protein Modification Screening Tool): a web-based tool for mapping protein modifications on two-dimensional gels
TL;DR: ProMoST is a flexible web tool that calculates the effect of single or multiple posttranslational modifications (PTMs) on protein isoelectric point (pI) and molecular weight and displays the calculated patterns as twoD gel images.
Journal ArticleDOI
A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets
Hairong Wei,Pei Fen Kuan,Shulan Tian,Chuhu Yang,Jeff Nie,Srikumar Sengupta,Victor Ruotti,Gudrun A. Jonsdottir,Sunduz Keles,James A. Thomson,Ron Stewart +10 more
TL;DR: It is proposed that isothermal probes designed by varying the length is a viable strategy to reduce sequence bias, though imposing selection constraints on other oligonucleotide properties is also essential.