Monterey Bay Aquarium Research Institute

About: Monterey Bay Aquarium Research Institute is a nonprofit organization based out in Castroville, California, United States. It is known for research contribution in the topics: Upwelling & Population. The organization has 630 authors who have published 2068 publications receiving 119899 citations. The organization is also known as: Monterey Bay Aquarium and Research Institute & MBARI.

Natural-language retrieval of images based on descriptive captions

Abstract: We describe a prototype intelligent information retrieval system that uses natural-language understanding to efficiently locate captioned data. Multimedia data generally require captions to explain their features and significance. Such descriptive captions often rely on long nominal compounds (strings of consecutive nouns) which create problems of disambiguating word sence. In our system, captions and user queries are parsed and interpreted to produce a logical form using a detailed theory of the meaning of nominal compounds. A fine-grain match can then compare the logical form of the query to the logical forms for each caption. To improve system efficiency, we first perform a coarse-grain match with index files, using nouns and verbs extracted from the query. Our experiments with randomly selected queries and captions from an existing image library show an increase of 30% in precision and 50% in recall over the keyphrase approach currently used. Our processing times have a median of seven seconds as compared to eight minutes for the existing system, and our system is much easier to use.

Experimental determination of the fate of rising CO2 droplets in seawater.

Abstract: Direct oceanic disposal of fossil fuel CO2 is being considered as a possible means to moderate the growth rate of CO2 in the atmosphere. We have measured the rise rate and dissolution rate of freely released CO2 droplets in the open ocean to provide fundamental data for carbon sequestration options. A small amount of liquid CO2 was released at 800 m, at 4.4 degrees C, and the rising droplet stream was imaged with a HDTV camera carried on a remotely operated vehicle. The initial rise rate for 0.9-cm diameter droplets was 10 cm/s at 800 m, and the dissolution rate was 3.0 micromol cm(-2) s(-1). While visual contact was maintained for 1 h and over a 400 m ascent, 90% of the mass loss occurred within 30 min over a 200 m ascent above the release point. Images of droplets crossing the liquid-gas-phase boundary showed formation of a gas head, pinching off of a liquid tail, and rapid gas bubble separation and dissolution.

New Constraints on Methane Fluxes and Rates of Anaerobic Methane Oxidation in a Gulf of Mexico Brine Pool via In Situ Mass Spectrometry

Abstract: Deep-sea biogeochemical cycles are, in general, poorly understood owing to the difficulties of making measurements in situ, recovering samples with minimal perturbation, and, in many cases, coping with high spatial and temporal heterogeneity. In particular, biogeochemical fluxes of volatiles such as methane remain largely unconstrained because of the difficulties with accurate quantification in situ and the patchiness of point sources such as seeps and brine pools. To better constrain biogeochemical fluxes and cycling, we have developed a deep-sea in situ mass spectrometer (ISMS) to enable high-resolution quantification of volatiles in situ. Here we report direct measurements of methane concentrations made in a Gulf of Mexico brine pool located at a depth of over 2300 m. Concentrations of up to 33 mM methane were observed within the brine pool, whereas concentrations in the water directly above were three orders of magnitude lower. These direct measurements enabled us to make the first accurate estimates of the diffusive flux from a brine pool, calculated to be 1.1±0.2 mol m−2 yr−1. Integrated rate measurements of aerobic methane oxidation in the water column overlying the brine pool were ∼320 μmol m−2 yr−1, accounting at most for just 0.03% of the diffusive methane flux from the brine pool. Calculated rates of anaerobic methane oxidation were 600–1200 μM yr−1, one to two orders of magnitude higher than previously published values of AOM in anoxic fluids. These findings suggest that brine pools are enormous point sources of methane in the deep sea, and may, in aggregate, have a pronounced impact on the global marine methane cycle.

Distribution Patterns and Phylogeny of Marine Stramenopiles in the North Pacific Ocean

Abstract: Marine stramenopiles (MASTs) are a diverse suite of eukaryotic microbes found in marine environments. Several MAST lineages are thought to contain heterotrophic nanoflagellates. However, MASTs remain uncultured and data on distributions and trophic modes are limited. We investigated MASTs in provinces on the west and east sides of the North Pacific Subtropical Gyre, specifically the East China Sea (ECS) and the California Current system (CALC). For each province, DNA was sampled from three zones: coastal, mesotrophic transitional, and more oligotrophic euphotic waters. Along with diatoms, chrysophytes, and other stramenopiles, sequences were recovered from nine MAST lineages in the six ECS and four CALC 18S rRNA gene clone libraries. All but one of these libraries were from surface samples. MAST clusters 1, 3, 7, 8, and 11 were identified in both provinces, with MAST cluster 3 (MAST-3) being found the most frequently. Additionally, MAST-2 was detected in the ECS and MAST-4, -9, and -12 were detected in the CALC. Phylogenetic analysis indicated that some subclades within these lineages differ along latitudinal gradients. MAST-1A, -1B, and -1C and MAST-4 size and abundance estimates obtained using fluorescence in situ hybridization on 79 spring and summer ECS samples showed a negative correlation between size of MAST-1B and MAST-4 cells and temperature. MAST-1A was rarely detected, but MAST-1B and -1C and MAST-4 were abundant in summer and MAST-1C and MAST-4 were more so at the coast, with maximum abundances of 543 and 1,896 cells ml(-1), respectively. MAST-4 and Synechococcus abundances were correlated, and experimental work showed that MAST-4 ingests Synechococcus. Together with previous studies, this study helps refine hypotheses on distribution and trophic modes of MAST lineages.