Showing papers by "Monterey Bay Aquarium Research Institute published in 2009"

Climatological mean and decadal change in surface ocean pCO2, and net sea–air CO2 flux over the global oceans

Abstract: A climatological mean distribution for the surface water pCO2 over the global oceans in non-El Nino conditions has been constructed with spatial resolution of 4° (latitude) ×5° (longitude) for a reference year 2000 based upon about 3 million measurements of surface water pCO2 obtained from 1970 to 2007. The database used for this study is about 3 times larger than the 0.94 million used for our earlier paper [Takahashi et al., 2002. Global sea–air CO2 flux based on climatological surface ocean pCO2, and seasonal biological and temperature effects. Deep-Sea Res. II, 49, 1601–1622]. A time-trend analysis using deseasonalized surface water pCO2 data in portions of the North Atlantic, North and South Pacific and Southern Oceans (which cover about 27% of the global ocean areas) indicates that the surface water pCO2 over these oceanic areas has increased on average at a mean rate of 1.5 μatm y−1 with basin-specific rates varying between 1.2±0.5 and 2.1±0.4 μatm y−1. A global ocean database for a single reference year 2000 is assembled using this mean rate for correcting observations made in different years to the reference year. The observations made during El Nino periods in the equatorial Pacific and those made in coastal zones are excluded from the database. Seasonal changes in the surface water pCO2 and the sea-air pCO2 difference over four climatic zones in the Atlantic, Pacific, Indian and Southern Oceans are presented. Over the Southern Ocean seasonal ice zone, the seasonality is complex. Although it cannot be thoroughly documented due to the limited extent of observations, seasonal changes in pCO2 are approximated by using the data for under-ice waters during austral winter and those for the marginal ice and ice-free zones. The net air–sea CO2 flux is estimated using the sea–air pCO2 difference and the air–sea gas transfer rate that is parameterized as a function of (wind speed)2 with a scaling factor of 0.26. This is estimated by inverting the bomb 14C data using Ocean General Circulation models and the 1979–2005 NCEP-DOE AMIP-II Reanalysis (R-2) wind speed data. The equatorial Pacific (14°N–14°S) is the major source for atmospheric CO2, emitting about +0.48 Pg-C y−1, and the temperate oceans between 14° and 50° in the both hemispheres are the major sink zones with an uptake flux of −0.70 Pg-C y−1 for the northern and −1.05 Pg-C y−1 for the southern zone. The high-latitude North Atlantic, including the Nordic Seas and portion of the Arctic Sea, is the most intense CO2 sink area on the basis of per unit area, with a mean of −2.5 tons-C month−1 km−2. This is due to the combination of the low pCO2 in seawater and high gas exchange rates. In the ice-free zone of the Southern Ocean (50°–62°S), the mean annual flux is small (−0.06 Pg-C y−1) because of a cancellation of the summer uptake CO2 flux with the winter release of CO2 caused by deepwater upwelling. The annual mean for the contemporary net CO2 uptake flux over the global oceans is estimated to be −1.6±0.9 Pg-C y−1, which includes an undersampling correction to the direct estimate of −1.4±0.7 Pg-C y−1. Taking the pre-industrial steady-state ocean source of 0.4±0.2 Pg-C y−1 into account, the total ocean uptake flux including the anthropogenic CO2 is estimated to be −2.0±1.0 Pg-C y−1 in 2000.

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

Abstract: Picoeukaryotes are a taxonomically diverse group of organisms less than 2 micrometers in diameter. Photosynthetic marine picoeukaryotes in the genus Micromonas thrive in ecosystems ranging from tropical to polar and could serve as sentinel organisms for biogeochemical fluxes of modern oceans during climate change. These broadly distributed primary producers belong to an anciently diverged sister clade to land plants. Although Micromonas isolates have high 18S ribosomal RNA gene identity, we found that genomes from two isolates shared only 90% of their predicted genes. Their independent evolutionary paths were emphasized by distinct riboswitch arrangements as well as the discovery of intronic repeat elements in one isolate, and in metagenomic data, but not in other genomes. Divergence appears to have been facilitated by selection and acquisition processes that actively shape the repertoire of genes that are mutually exclusive between the two isolates differently than the core genes. Analyses of the Micromonas genomes offer valuable insights into ecological differentiation and the dynamic nature of early plant evolution.

Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species

Abstract: American Genetic Association, Gordon and Betty Moore Foundation, NHGRI Intramural Sequencing Center, and UCSC Alumni Association to cost of the Genome 10K workshop; Howard Hughes Medical Institute to D. H.; Gordon and Betty Moore Foundation to S. C. S.; A

Climate, carbon cycling, and deep-ocean ecosystems.

Abstract: Climate variation affects surface ocean processes and the production of organic carbon, which ultimately comprises the primary food supply to the deep-sea ecosystems that occupy ≈60% of the Earth's surface Warming trends in atmospheric and upper ocean temperatures, attributed to anthropogenic influence, have occurred over the past four decades Changes in upper ocean temperature influence stratification and can affect the availability of nutrients for phytoplankton production Global warming has been predicted to intensify stratification and reduce vertical mixing Research also suggests that such reduced mixing will enhance variability in primary production and carbon export flux to the deep sea The dependence of deep-sea communities on surface water production has raised important questions about how climate change will affect carbon cycling and deep-ocean ecosystem function Recently, unprecedented time-series studies conducted over the past two decades in the North Pacific and the North Atlantic at >4,000-m depth have revealed unexpectedly large changes in deep-ocean ecosystems significantly correlated to climate-driven changes in the surface ocean that can impact the global carbon cycle Climate-driven variation affects oceanic communities from surface waters to the much-overlooked deep sea and will have impacts on the global carbon cycle Data from these two widely separated areas of the deep ocean provide compelling evidence that changes in climate can readily influence deep-sea processes However, the limited geographic coverage of these existing time-series studies stresses the importance of developing a more global effort to monitor deep-sea ecosystems under modern conditions of rapidly changing climate

Limits to marine life

Abstract: Ocean "dead zones" devoid of aerobic life are likely to grow as carbon dioxide concentrations rise

Clathrate Hydrates in Nature

Abstract: Scientific knowledge of natural clathrate hydrates has grown enormously over the past decade, with spectacular new findings of large exposures of complex hydrates on the sea floor, the development of new tools for examining the solid phase in situ, significant progress in modeling natural hydrate systems, and the discovery of exotic hydrates associated with sea floor venting of liquid CO2. Major unresolved questions remain about the role of hydrates in response to climate change today, and correlations between the hydrate reservoir of Earth and the stable isotopic evidence of massive hydrate dissociation in the geologic past. The examination of hydrates as a possible energy resource is proceeding apace for the subpermafrost accumulations in the Arctic, but serious questions remain about the viability of marine hydrates as an economic resource. New and energetic explorations by nations such as India and China are quickly uncovering large hydrate findings on their continental shelves.

Protists are microbes too: a perspective.

Abstract: Our understanding of the composition and activities of microbial communities from diverse habitats on our planet has improved enormously during the past decade, spurred on largely by advances in molecular biology. Much of this research has focused on the bacteria, and to a lesser extent on the archaea and viruses, because of the relative ease with which these assemblages can be analyzed and studied genetically. In contrast, single-celled, eukaryotic microbes (the protists) have received much less attention, to the point where one might question if they have somehow been demoted from the position of environmentally important taxa. In this paper, we draw attention to this situation and explore several possible (some admittedly lighthearted) explanations for why these remarkable and diverse microbes have remained largely overlooked in the present ‘era of the microbe’.

Mass stranding of marine birds caused by a surfactant-producing red tide.

Abstract: In November-December 2007 a widespread seabird mortality event occurred in Monterey Bay, California, USA, coincident with a massive red tide caused by the dinoflagellate Akashiwo sanguinea. Affected birds had a slimy yellow-green material on their feathers, which were saturated with water, and they were severely hypothermic. We determined that foam containing surfactant-like proteins, derived from organic matter of the red tide, coated their feathers and neutralized natural water repellency and insulation. No evidence of exposure to petroleum or other oils or biotoxins were found. This is the first documented case of its kind, but previous similar events may have gone undetected. The frequency and amplitude of red tides have increased in Monterey Bay since 2004, suggesting that impacts on wintering marine birds may continue or increase.

Climate‐driven changes in abundance and distribution of larvae of oceanic fishes in the southern California region

Abstract: We examined climatic effects on the geographic distribution and abundance of 34 dominant oceanic fishes in the southern California region using larval fish data collected from the 50-year long California Cooperative Oceanic Fisheries Investigations (CalCOFI) surveys. The oceanic species responses to environmental changes in their geographic distributions were not very pronounced, perhaps because they lived in the deep layer where temperature change was relatively small or because the environmental variation of the CalCOFI region is not strong enough (with an average temperature gradient of the upper 100m around 91km 1C � 1 ). Among the 34 taxa, 16 showed a significant distributional shift (median latitude or boundaries) in relation to environmental variables, and eight species significantly shifted their geographic distribution from the 1951‐1976 cold period to the 1977‐1998 warm period. Interestingly, the vertically migrating taxa more often showed a significant response to environmental variables than the nonmigrating mesopelagic taxa, reflecting the more significant increase in heat content of the upper ocean (o200m), compared with the deeper zone (300‐500m) where the mesopelagic fishes typically remain. Climate change has significant effects on the abundances of oceanic fishes. Twenty-four taxa exhibited a significant change in abundance in relation to environmental variables, and 25 taxa, including both warm and cold-water taxa, showed a significant increase in abundance from the cold to warm period. Analysis of physical data indicated that the surface-layer (20‐200m) warmed significantly and the isotherms approached shoreward from the cold to the warm period. We further show that the spatial distribution of coastal‐neritic fish retreated shoreward and oceanic fish extended shoreward from the cold to warm period. Our results suggest intensified stratification of the southern California region during the warm period may create a suitable habitat for the oceanic species. Moreover, such an unfavorable condition (e.g. changes in food habitat) for coastal‐neritic species might result in competitive release for the oceanic fishes to flourish.

Preparing to predict: The Second Autonomous Ocean Sampling Network (AOSN-II) experiment in the Monterey Bay

Abstract: The Autonomous Ocean Sampling Network Phase Two (AOSN-II) experiment was conducted in and offshore from the Monterey Bay on the central California coast during July 23–September 6, 2003. The objective of the experiment was to learn how to apply new tools, technologies, and analysis techniques to adaptively sample the coastal ocean in a manner demonstrably superior to traditional methodologies, and to use the information gathered to improve predictive skill for quantities of interest to end-users. The scientific goal was to study the upwelling/relaxation cycle near an open coastal bay in an eastern boundary current region, particularly as it developed and spread from a coastal headland. The suite of observational tools used included a low-flying aircraft, a fleet of underwater gliders, including several under adaptive autonomous control, and propeller-driven AUVs in addition to moorings, ships, and other more traditional hardware. The data were delivered in real time and assimilated into the Harvard Ocean Prediction System (HOPS), the Navy Coastal Ocean Model (NCOM), and the Jet Propulsion Laboratory implementation of the Regional Ocean Modeling System (JPL/ROMS). Two upwelling events and one relaxation event were sampled during the experiment. The upwelling in both cases began when a pool of cold water less than 13 °C appeared near Cape Ano Nuevo and subsequently spread offshore and southward across the bay as the equatorward wind stress continued. The primary difference between the events was that the first event spread offshore and southward, while the second event spread only southward and not offshore. The difference is attributed to the position and strength of meanders and eddies of the California Current System offshore, which blocked or steered the cold upwelled water. The space and time scales of the mesoscale variability were much shorter than have been previously observed in deep-water eddies offshore. Additional process studies are needed to elucidate the dynamics of the flow.

The correlation between surface drifters and coherent structures based on high-frequency radar data in Monterey Bay

Abstract: This paper investigates the transport structure of surface currents around the Monterey Bay, CA region. Currents measured by radar stations around Monterey Bay indicate the presence of strong, spatial and temporal, nonlinear patterns. To understand the geometry of the flow in the bay, Lagrangian coherent structures (LCS) are computed. These structures are mobile separatrices that divide the flow into regions of qualitatively different dynamics. They provide direct information about the flow structure but are geometrically simpler than particle trajectories themselves. The LCS patterns were used to reveal the mesoscale flow conditions observed during the 2003 Autonomous Ocean Sampling Network (AOSN-II) experiment. Drifter paths from the AOSN experiment were compared to the patterns induced by the LCS computed from high-frequency radar data. We verify that the fate of the drifters can be better characterized based on the LCS than direct interpretation of the current data. This property can be exploited to optimize drifter deployment.

Geographical Parthenogenesis: General Purpose Genotypes and Frozen Niche Variation

Abstract: Clonally reproducing all-female lineages of plants and animals are often more frequent at higher latitudes and altitudes, on islands, and in disturbed habitats. Attempts to explain this pattern, known as geographical parthenogenesis, generally treat the parthenogens as fugitive species that occupy marginal environments to escape competition with their sexual relatives. These ideas often fail to consider the early competitive interactions with immediate sexual ancestors, which shape alternative paths that newly formed clonal lineages might follow. Here we review the history and evidence for two hypotheses concerning the evolution of niche breadth in asexual species – the “general-purpose genotype” (GPG) and “frozen niche-variation” (FNV) models. The two models are often portrayed as mutually exclusive, respectively viewing clonal lineages as generalists versus specialists. Nonetheless, they are complex syllogisms that share common assumptions regarding the likely origins of clonal diversity and the strength of interclonal selection in shaping the ecological breadth of asexual populations. Both models find support in ecological and phylogeographic studies of a wide range of organisms, and sometimes generalist and specialist traits (e.g., physiological tolerance, microspatial preference, seasonal abundance, food habits, etc.) are found together in an asexual organism. Ultimately, persistent natural clones should be viewed as microspecies in ecological models that consider spatial and temporal heterogeneity rather than multi-locus genotypes in simplistic population models.

Rapid reorganization in ocean biogeochemistry off Peru towards the end of the Little Ice Age

Abstract: . Climate and ocean ecosystem variability has been well recognized during the twentieth century but it is unclear if modern ocean biogeochemistry is susceptible to the large, abrupt shifts that characterized the Late Quaternary. Time series from marine sediments off Peru show an abrupt centennial-scale biogeochemical regime shift in the early nineteenth century, of much greater magnitude and duration than present day multi-decadal variability. A rapid expansion of the subsurface nutrient-rich, oxygen-depleted waters resulted in the present-day higher biological productivity, including pelagic fish. The shift was likely driven by a northward migration of the Intertropical Convergence Zone and the South Pacific Subtropical High to their present day locations, coupled with a strengthening of Walker circulation, towards the end of the Little Ice Age. These findings reveal the potential for large reorganizations in tropical Pacific climate with immediate effects on ocean biogeochemical cycling and ecosystem structure.

Cryptic species, phenotypic plasticity, and complex life histories: Assessing deep-sea faunal diversity with molecular markers

Abstract: Many new species of animals have been discovered during the past 40 years of deep-ocean exploration, particularly in chemosynthetic habitats such as hydrothermal vents and cold-water hydrocarbon seeps. Estimating species diversity in these environments is difficult, however, because insufficient sampling often fails to capture the range of organismic variability in time and space. Molecular systematic studies have revealed a number of taxonomic problems that derive from insufficient sampling and a shallow knowledge base regarding many deep-sea taxa. For example, numerous morphologically cryptic species exist among the vesicomyid clams and lepetodrilid limpets that dominate vents and seeps worldwide, suggesting that species richness may be significantly underestimated in these taxa. In contrast, discrete morphotypes of siboglinid tubeworms that are products of developmental plasticity were assigned synonymous species names. Also, distinct juvenile and adult forms of vent shrimp were assigned synonymous genus and species names. Though molecular studies have resolved many of these problems, they are not a panacea because they also suffer from insufficient sampling of taxa and genes, and from contamination of DNA sequences. Working carefully together, molecular and traditional systematists should eventually generate more accurate species lists that allow unbiased estimates of species richness in deep-sea environments.

Conservation of Deep Pelagic Biodiversity

Abstract: The deep ocean is home to the largest ecosystems on our planet. This vast realm contains what may be the greatest number of animal species, the greatest biomass, and the greatest number of individual organisms in the living world. Humans have explored the deep ocean for about 150 years, and most of what is known is based on studies of the deep seafloor. In contrast, the water column above the deep seabed comprises more than 90% of the living space, yet less than 1% of this biome has been explored. The deep pelagic biota is the largest and least-known major faunal group on Earth despite its obvious importance at the global scale. Pelagic species represent an incomparable reservoir of biodiversity. Although we have yet to discover and describe the majority of these species, the threats to their continued existence are numerous and growing. Conserving deep pelagic biodiversity is a problem of global proportions that has never been addressed comprehensively. The potential effects of these threats include the extensive restructuring of entire ecosystems, changes in the geographical ranges of many species, large-scale elimination of taxa, and a decline in biodiversity at all scales. This review provides an initial framework of threat assessment for confronting the challenge of conserving deep pelagic biodiversity; and it outlines the need for baseline surveys and protected areas as preliminary policy goals.

Endemicity, Biogeography, Composition, and Community Structure On a Northeast Pacific Seamount

Abstract: The deep ocean greater than 1 km covers the majority of the earth’s surface. Interspersed on the abyssal plains and continental slope are an estimated 14000 seamounts, topographic features extending 1000 m off the seafloor. A variety of hypotheses are posited that suggest the ecological, evolutionary, and oceanographic processes on seamounts differ from those governing the surrounding deep sea. The most prominent and oldest of these hypotheses, the seamount endemicity hypothesis (SMEH), states that seamounts possess a set of isolating mechanisms that produce highly endemic faunas. Here, we constructed a faunal inventory for Davidson Seamount, the first bathymetric feature to be characterized as a ‘seamount’, residing 120 km off the central California coast in approximately 3600 m of water (Fig 1). We find little support for the SMEH among megafauna of a Northeast Pacific seamount; instead, finding an assemblage of species that also occurs on adjacent continental margins. A large percentage of these species are also cosmopolitan with ranges extending over much of the Pacific Ocean Basin. Despite the similarity in composition between the seamount and non-seamount communities, we provide preliminary evidence that seamount communities may be structured differently and potentially serve as source of larvae for suboptimal, non-seamount habitats.

Improved algorithm for the computation of nitrate concentrations in seawater using an in situ ultraviolet spectrophotometer

Abstract: Improvements in the data processing algorithm and calibration procedures have greatly increased the accuracy of nitrate measurements using an in situ ultraviolet spectrophotometer (ISUS). Two major changes in the algorithm involve application of a temperature-dependent correction to the bromide spectrum and then using the observed temperature and salinity to subtract the bromide component before fitting nitrate. By reducing the degrees of freedom in calculating nitrate concentrations, the accuracy of the ISUS instrument is substantially improved. The new algorithm was tested in environments ranging from the Southern Ocean to oligotrophic eastern Pacific seawater and found to be applicable at all temperatures and depths. The standard error of the estimate for regression between ISUS nitrate values and discrete samples measured by standard wet chemistry methods for the combined data set is reduced by greater than 2-fold (1.4 down to 0.65 µM) using the new algorithm. This corresponds to a 5-fold reduction in variance (2.0 down to 0.4 µM2). Although biofouling and calibration drift remain issues for any instrument deployed in situ for long periods of time, using the measured salinity and temperature to correct the ultraviolet spectra before the nitrate calculations will reduce the impacts of these confounding processes.

Development, implementation and evaluation of a data-assimilative ocean forecasting system off the central California coast

Abstract: The development and implementation of a real-time ocean forecast system based on the Regional Ocean Modeling System (ROMS) off the coast of central California are described. The ROMS configuration consists of three nested modeling domains with increasing spatial resolutions: the US West coastal ocean at 15-km resolution, the central California coastal ocean at 5 km, and the Monterey Bay region at 1.5 km. All three nested models have 32 vertical sigma (or terrain-following) layers and were integrated in conjunction with a three-dimensional variational data assimilation algorithm (3DVAR) to produce snapshots of the ocean state every 6 h (the reanalysis) and 48-h forecasts once a day. This ROMS forecast system was operated in real time during the field experiment known as the Autonomous Ocean Sampling Network (AOSN-II) in August 2003. After the field experiment, a number of improvements were made to the ROMS forecast system: more data were added in the reanalysis with more careful quality control procedures, improvements were made in the data assimilation scheme, as well as model surface and side boundary conditions. The results from the ROMS reanalysis are presented here. The ROMS reanalysis is first compared with the assimilated data as a consistency check. An evaluation of the ROMS reanalysis against the independent measurements that are not assimilated into the model is then presented. This evaluation shows the mean differences in temperature and salinity between reanalysis and observations to be less than 1 °C and 0.2 psu (practical salinity unit), respectively, with root-mean-square (RMS) differences of less than 1.5 °C and 0.25 psu. Qualitative agreement is found between independent current measurements and the ROMS reanalysis. The agreement is particularly good for the vertically integrated current along the offshore glider tracks: the ROMS reanalysis can realistically reproduce the poleward California Undercurrent. Reasonably good agreement is found in the spatial patterns of the surface current as measured by high-frequency (HF) radars. Preliminary results concerning the ROMS forecast skill and predictability are also presented. Future plans to improve the ROMS forecast system with a particular focus on assimilation of HF radar current measurements are discussed.

A remarkable diversity of bone-eating worms (Osedax; Siboglinidae; Annelida).

Abstract: Bone-eating Osedax worms have proved to be surprisingly diverse and widespread Including the initial description of this genus in 2004, five species that live at depths between 25 and 3,000 m in the eastern and western Pacific and in the north Atlantic have been named to date Here, we provide molecular and morphological evidence for 12 additional evolutionary lineages from Monterey Bay, California To assess their phylogenetic relationships and possible status as new undescribed species, we examined DNA sequences from two mitochondrial (COI and 16S rRNA) and three nuclear genes (H3, 18S and 28S rRNA) Phylogenetic analyses identified 17 distinct evolutionary lineages Levels of sequence divergence among the undescribed lineages were similar to those found among the named species The 17 lineages clustered into five well-supported clades that also differed for a number of key morphological traits Attempts to determine the evolutionary age of Osedax depended on prior assumptions about nucleotide substitution rates According to one scenario involving a molecular clock calibrated for shallow marine invertebrates, Osedax split from its siboglinid relatives about 45 million years ago when archeocete cetaceans first appeared and then diversified during the late Oligocene and early Miocene when toothed and baleen whales appeared Alternatively, the use of a slower clock calibrated for deep-sea annelids suggested that Osedax split from its siboglinid relatives during the Cretaceous and began to diversify during the Early Paleocene, at least 20 million years before the origin of large marine mammals To help resolve uncertainties about the evolutionary age of Osedax, we suggest that the fossilized bones from Cretaceous marine reptiles and late Oligocene cetaceans be examined for possible trace fossils left by Osedax roots Regardless of the outcome, the present molecular evidence for strong phylogenetic concordance across five separate genes suggests that the undescribed Osedax lineages comprise evolutionarily significant units that have been separate from one another for many millions of years These data coupled with ongoing morphological analyses provide a solid foundation for their future descriptions as new species

Observations of second baroclinic mode internal solitary waves on the continental slope of the northern South China Sea

Abstract: [1] A temperature and current velocity mooring, located on the upper continental slope of the northern South China Sea, recorded a number of second baroclinic mode (mode 2) internal solitary waves (ISWs). These types of waves are seldom observed in nature. The mode 2 ISWs typically showed upward (downward) displacement of isotherms in the upper (lower) water column and three layers of eastward, westward, and eastward current from the uppermost to bottommost portions of a wave. In summer, westward-propagating mode 2 ISWs were observed only occasionally. These waves generally appeared after mode 1 ISWs, a feature that may relate to the diurnal tide with a period of approximately 24 hours. The displacement of isotherms induced by mode 2 ISWs was 20 ± 14 m at 75 m and ―22 ± 15 m at 240 m, and the characteristic time scale was approximately 8.0 ± 4.3 min. In winter, mode 2 ISWs were more active but mode 1 ISWs were rarely observed. Isotherm displacement by mode 2 ISWs in winter was 30 ± 18 m at 75 m and ―26 ± 16 m at 240 m, and the average characteristic time scale was 6.9 ± 4.6 min. The mode 2 ISWs thus had larger amplitudes and smaller time scales in winter than they did in summer. The observed vertical temperature profile also showed notable seasonal change. The thermocline was shallow in summer and deep in winter. In winter, vertical temperature profiles indicated that the main thermocline was located near middepth over the upper continental slope near the 350 m isobath. Mode 1 ISWs were more active in summer than in winter, reflecting the larger Ursell numbers for mode 1 ISWs in summer. Among mode 2 ISWs in summer, 90% appeared after mode 1 ISWs. These results suggest that mode 2 ISWs could be related to mode 1 ISWs. In contrast, mode 2 ISWs were more active in winter than in summer, with larger mode 2 Ursell numbers also found in winter. Among winter mode 2 ISWs, 72% appeared without mode 1 ISWs. Mode 2 ISWs in winter could be related to the main thermocline being located near middepth. These seasonal variations of mode 2 ISWs were correlated with the seasonal change of local stratification. Further study on the different generating mechanisms of mode 2 ISWs in summer and winter is needed.

Forecasting and Reanalysis in the Monterey Bay/California Current Region for the Autonomous Ocean Sampling Network-II Experiment

Abstract: During the August–September 2003 Autonomous Ocean Sampling Network-II experiment, the Harvard Ocean Prediction System (HOPS) and Error Subspace Statistical Estimation (ESSE) system were utilized in real-time to forecast physical fields and uncertainties, assimilate various ocean measurements (CTD, AUVs, gliders and SST data), provide suggestions for adaptive sampling, and guide dynamical investigations. The qualitative evaluations of the forecasts showed that many of the surface ocean features were predicted, but that their detailed positions and shapes were less accurate. The root-mean-square errors of the real-time forecasts showed that the forecasts had skill out to two days. Mean one-day forecast temperature RMS error was 0.26 ∘ C less than persistence RMS error. Mean two-day forecast temperature RMS error was 0.13 ∘ C less than persistence RMS error. Mean one- or two-day salinity RMS error was 0.036 PSU less than persistence RMS error. The real-time skill in the surface was found to be greater than the skill at depth. Pattern correlation coefficient comparisons showed, on average, greater skill than the RMS errors. For simulations lasting 10 or more days, uncertainties in the boundaries could lead to errors in the Monterey Bay region. Following the real-time experiment, a reanalysis was performed in which improvements were made in the selection of model parameters and in the open-boundary conditions. The result of the reanalysis was improved long-term stability of the simulations and improved quantitative skill, especially the skill in the main thermocline (RMS simulation error 1 ∘ C less than persistence RMS error out to five days). This allowed for an improved description of the ocean features. During the experiment there were two-week to 10-day long upwelling events. Two types of upwelling events were observed: one with plumes extending westward at point Ano Nuevo (AN) and Point Sur (PS); the other with a thinner band of upwelled water parallel to the coast and across Monterey Bay. During strong upwelling events the flows in the upper 10–20 m had scales similar to atmospheric scales. During relaxation, kinetic energy becomes available and leads to the development of mesoscale features. At 100–300 m depths, broad northward flows were observed, sometimes with a coastal branch following topographic features. An anticyclone was often observed in the subsurface fields in the mouth of Monterey Bay.

Benthic invertebrate communities on three seamounts off southern and central California, USA

Abstract: Seamounts are unique and biologically productive deep-sea habitats that have often been described as having high levels of endemism, highly productive fisheries, and benthic commu- nities vulnerable to trawl fishing We describe the abundance and distribution of benthic megafaunal invertebrates found on 3 seamounts off central and southern California Video observations were taken during 27 dives of a remotely operated vehicle (ROV) and were annotated in detail using the Monterey Bay Aquarium Research Institute's (MBARI) video annotation reference system (VARS, http://varssourceforgenet/) Video analysis yielded 134 477 observations of 202 identified inverte- brate taxa Video transects were analyzed to quantify organism density Thirteen new species were observed and collected Invertebrate communities at Davidson and Pioneer Seamounts were domi- nated by passive suspension-feeding cnidarians (mostly corals), but at Rodriguez Seamount, a guyot, the invertebrate community was dominated by holothurian echinoderms We found no evidence of endemism among the megafauna at these 3 seamounts, which are all in close proximity to each other and the continental margin