Showing papers in "Journal of the Marine Biological Association of the United Kingdom in 2006"
TL;DR: It is suggested that virus-mediated DOM is a source of a variety of organic compounds, which contribute significantly to the pool of rapidly recycling material in the ocean.
Abstract: ��������� � �� ���������� Viral infection of bacteria causes release of dissolved organic matter (DOM), which is available for bacterial uptake. In aquatic environments, this virus-mediated transformation of living cells into dissolved and colloidal organic matter may be a quantitatively important process in the pelagic recycling of carbon and nutrients, but little is known about the amount, composition, or bioavailability of viral lysates. By using a model system of a marine bacterium (Cellulophaga sp.) and a virus speci¢c to this bacterium, the present study provides a ¢rst quanti¢cation of the input of dissolved free and combined amino acids (DFAA and DCAA) and bacterial cell wall compounds following viral lysis. The DCAA constituted 51^86% of the total virus-mediated organic carbon release of 1087^1825m gCl 71 (estimated biomass of the lysed bacteria), whereas DFAA and glucosamine each accounted for 2^3% of total lysate-C. The viral particles themselves constituted 4^6% of the released organic carbon, and altogether, the applied analyses thus identi¢ed 53^92% of the released lysates. Approximately 12% of the identi¢ed compounds were derived from bacterial cell wall peptidoglycan, including various D-isomers of DFAA and DCAA, glucosamine and diaminopimelic acid (DAPA). Although a portion of this cell wall material may have entered the pool of refractory material, a signi¢cant fraction of some peptidoglycan-derived components, e.g. 83% of the released D-DFAA, were removed from the dissolved phase during the last part of the incubations, suggesting that part of the cell wall material were utilized by the developing virus-resistant Cellulophaga population. Therefore, we suggest that virus-mediated DOM is a source of a variety of organic compounds, which contribute signi¢cantly to the pool of rapidly recycling material in the ocean.
152 citations
TL;DR: The across systems' finding that BS was significantly related to the frequency of infected cells (FIC) could be due to co-infection or superinfection, and some relations between BS and bacterial variables were detectable.
Abstract: Viral burst size (BS), i.e. the number of viruses released during cell lysis, is a critical parameter for assessing the ecological and biogeochemical role of viruses in aquatic systems. Burst size is typically estimated by enumerating the viral particles in bacteria using transmission electron microscopy. Here, we review the average BS reported for different aquatic systems, present several hypotheses on the control of the BS and evaluate whether there are relationships between BS and bacterial activity parameters across systems. Based on reports from a variety of different aquatic environments, we calculated a mean BS of 24 and 34 for marine and freshwater environments, respectively. Generally, the BS increased with the trophic status of the environment and with the percentage of infected cells in marine populations. When diel dynamics were investigated or averages from large-scale environments were used, BS was positively related to bacterial production but no trend was detectable across systems. The across systems' finding that BS was significantly related to the frequency of infected cells (FIC) could be due to co-infection or superinfection. At any given site, BS seems to be influenced by a number of factors such as the size of the host cell and the viruses, the metabolic activity of the host and phage and host diversity. Thus, based on the available data collected over the past two decades on a variety of aquatic systems, some relations between BS and bacterial variables were detectable.
150 citations
TL;DR: The results of this survey indicate that dock pontoon systems in southern England are significant reservoirs of non-native species dispersed by vessels and other means, and the proliferation of these structures is therefore of conservation importance.
Abstract: Arenas, F., Bishop, J.D.D., Carlton, J.T., Dyrynda, P.J., Farnham, W.F., Gonzalez, D.J., Jacobs, M.W., Lambert, C., Lambert, G., Nielsen, S.E., Pederson, J.A., Porter, J.S., Ward, S., Wood, C.A. (2006). Alien species and other notable records from a rapid assessment survey of marinas on the south coast of England. Journal of the Marine Biological Association of the United Kingdom, 86, (6), 1329-1337. Sponsorship: National Science Foundation grant IOB 0407527; Esme Fairbairn Foundation ALIENS project
145 citations
TL;DR: In this article, the catch per unit area (CPUA) and total biomass of demersal fishes in the Persian Gulf and Oman Sea were estimated using a trawl survey.
Abstract: We report on results of a trawl survey during 2003^2004 to assess the abundance of demersal ¢sh resources in the Persian Gulf and Oman Sea. Samples were taken at a total of 316 trawl stations selected following a strati¢ed random procedure. Catch rates (catch per unit area, CPUA) and total biomass were estimated. Total demersal ¢sh biomass was estimated to be approximately 73,000 tonnes in Persian Gulf waters and approximately 39,000 tonnes in the Oman Sea. The lowest CPUA was recorded in the west of the study area (stratum A, approximately 1700 kg/n.m. 2 ) and the highest in the east (stratum Q, 13943.4 kg/n.m. 2 ), although density of commercially important species was higher in the central area (stratum K). Catch rate and biomass varied signi¢cantly in relation to seabed depth. Commercially important demersal species made up around 60% of the estimated total biomass. The most abundant species groups were rays, cat¢sh, grunts, nemipterids and carangids. Several important species (e.g. silver pomfret, croakers and sharks) appear to have declined since the late 1970s while others, such as rays and cat¢sh, have increased.
94 citations
TL;DR: A detailed illustrated key to the identification of the European species of the genera PalAemon and Palaemonetes is provided, based on external morphological characters to facilitate its use by non-specialists.
Abstract: A detailed illustrated key to the identi¢cation of the European species of the genera Palaemon and Palaemonetes is provided.This key has been elaborated taking into account recent changes in the species composition of both genera for European waters, such as the invalidity of Palaemon garciacidi, which is a synonym of P. longirostris, and the presence of an introduced species, Palaemon macrodactylus that has been recently recorded at diierent localities along the Atlantic coast. The key is based on external morphological characters to facilitate its use by non-specialists. Data on the coloration, habitat and distribution of all species are also given.
88 citations
TL;DR: The hypothesis that factors determining habitat structural complexity and environmental heterogeneity of Perumytilus matrices have significant effects on the associated macrofaunal community is tested.
Abstract: The mussel Perumytilus purpuratus is distributed from Ecuador to the Strait of Magellan on the Pacific coast; and also extends along the Atlantic coast up to La Loberia, Argentina. The species forms dense three-dimensional matrices which constitute a microhabitat for a wide variety of organisms. Here we test the hypothesis that factors determining habitat structural complexity and environmental heterogeneity of Perumytilus matrices have significant effects on the associated macrofaunal community. In total we found 92 invertebrate taxa in P. purpuratus matrices. The number of layers (stratification) in the matrix had a significant effect on evenness: the greater the stratification, the lower the evenness index. Sediment retention by matrices in sheltered sectors had a significant effect on evenness: greater sediment retention resulted in lower evenness. Sediment retention also determined significant differences in macrofaunal assemblages. In matrices without sediment retention, mussel layering and the presence of algae on the shells of P. purpuratus determined significant macrofaunal differences. As a dominant competitor, P. purpuratus plays a major role in intertidal rocky shores where it is present, structuring communities and determining local biodiversity.
88 citations
TL;DR: B Buccal masses, beaks and stomach contents of large and medium maturing-sized jumbo squid and muscle from its main prey, the myctophid Benthosema panamense, were collected in the Gulf of California, Mexico during 1996, 1997 and 1999 and revealed that larger-sized maturing squid showed a higher trophic position than medium-sized individuals.
Abstract: Stomach contents and carbon (C) and nitrogen (N) stable isotope analysis were used to evaluate trophic relationships of jumbo squid, Dosidicus gigas. Buccal masses, beaks and stomach contents of large and medium maturing-sized jumbo squid and muscle from its main prey, the myctophid Benthosema panamense, were collected in the Gulf of California, Mexico during 1996, 1997 and 1999. Both the quantified C and N-isotope ratios in muscle, and stomach content analysis revealed that larger-sized maturing squid showed a higher trophic position than medium-sized individuals. However, a discrepancy between stomach contents versus stable isotope analyses was found in evaluating trophic relationships. Simple dilution models as a function of growth were used to estimate the C and N renewal dietary shift for jumbo squid. Estimates of the initial C and N pools in D. gigas with an initial age of 70 days and 210 days indicated isotopic shifts of 32% after a threefold biomass increase and 25% after a fourfold biomass increase, respectively. Additionally, beak samples of jumbo squid were evaluated as an alternative tissue to estimate squid trophic position using stable isotopes. The results showed a significant correlation between stable isotope ratios from muscle and beak samples. Muscle isotope values were higher than beak by 1% and 4% for δ13C and δ15N respectively. A test with jumbo squid beaks collected from a stomach of a stranded sperm whale confirmed the viability of this method.
87 citations
TL;DR: The study of cyst and naupliar biometry revealed substantial differences between populations and can be used, to some extent, for their discrimination.
Abstract: Field surveys were conducted in order to collect information on the occurrence of wild Artemia populations in hypersaline environments such as salt lakes, lagoons and salty rivers. The mating behaviour of Artemia populations and the presence or absence of males were carefully recorded. Sampling involved the use of plankton nets. Collected cysts were characterized on the basis of their diameter and chorion thickness, while nauplii (instar-I) were characterized on the basis of their total length. Artemia populations were found at 17 different geographical locations scattered over 12 Iranian provinces. All Iranian Artemia populations are parthenogenetic with the exception of Artemia urmiana from Urmia Lake. During the last five years severe salinity increase has caused a dramatic reduction of population sizes in several hypersaline settings in Iran. The study of cyst and naupliar biometry revealed substantial differences between populations and can be used, to some extent, for their discrimination. Cyst diameter mean values range from 243.2 to 285.4 μm. For some Iranian parthenogens, cyst diameters were among the smallest recorded so far for parthenogenetic Artemia. The total length of newly hatched nauplii ranges from 455.5 to 529.8 μm.
85 citations
TL;DR: The analysis of literature citing rotifers in salt waters uncovers an unexpected rotifer fauna: the apparent richness of the group in thalassic environments is worthy of being addressed by further investigations, as many species have been reported only by their description, suggesting either considerable endemism or taxonomic errors.
Abstract: Rotifers are microscopic aquatic animals that comprise more than 1800 species. Most rotifer species live in freshwater and limno-terrestrial habitats, while thalassic environments (brackish+seawater) are thought to host few species. No recent review of saline rotifers is available. Here we report the results of a review of the literature concerning rotifers from saline environments, distinguished into three categories: stenohaline, euryhaline, and haloxenous, and found both in truly marine habitats and/or in inland saline waters. A total of about 200 studies, mentioning fully identified rotifers from saline waters, allowed us to list as many as 443 rotifer taxa at either specific, subspecific and infrasubspecific rank, corresponding to 391 nominal species. Truly thalassic taxa, not found in inland saline waters only, accounted for 289, including the ‘stenohaline’ (143) and the euryhaline (146) ones. As for freshwaters, the majority of the thalassic rotifers inhabit the psammon, or display a benthic–periphytic way of life, while the plankton likewise is less species rich and less abundant. The geographical distribution of the brackish and marine rotifers largely reflects the distribution of rotifer investigators, therefore, no biogeographical analysis can be performed yet. In conclusion, the analysis of literature citing rotifers in salt waters, uncovers an unexpected rotifer fauna: the apparent richness of the group in thalassic environments is worthy of being addressed by further investigations, as many species have been reported only by their description, suggesting either considerable endemism or taxonomic errors.
85 citations
TL;DR: Examples of the dramatic increase in knowledge of the diversity of marine viruses as pathogens of bacteria, protists, molluscs, crustaceans, cnidaria, reptiles, fish and mammals are provided.
Abstract: Viruses are the most abundant members of marine ecosystems and play an enormous role in ocean processes through their interactions with all types of marine organisms. This short review provides examples of the dramatic increase in our knowledge of the diversity of marine viruses as pathogens of bacteria, protists, molluscs, crustaceans, cnidaria, reptiles, fish and mammals. Several examples are provided showing evidence of evolution of new strains, changes in virulence, and transfer of viruses between ecosystems. The natural and anthropogenic causes of these shifts are discussed. Despite considerable advances in recent years, knowledge of the importance of viruses in many important groups of marine organisms is lacking or incomplete. Suggestions for future investigations necessary to understand the dynamics of biogeochemical processes and the impacts of disease in our oceans are proposed.
76 citations
TL;DR: In this paper, the authors determined the optimum spawning temperatures for sardine (Sardina pilchardus) in the eastern North Atlantic from egg survey data and compared with climatological temperature cycles (1986 2002) derived from satellite observations, by geographical region, to predict spawning seasons.
Abstract: Spawning temperature preferences for sardine (Sardina pilchardus) in the eastern North Atlantic were determined from egg survey data. These were compared with climatological temperature cycles (1986 2002) derived from satellite observations, by geographical region, to predict spawning seasons. Optimum spawning temperatures were determined as 14.0-15.0°C from the English Channel to Portugal and 16.0-18.0°C for all north-west African regions. Spawning seasons were closely related to the general latitudinal trend of the annual temperature cycle, with modification by upwelling in the western Iberian and north-west African regions. Some differences between temperature-based spawning season predictions and field observations were related to variations in seasonal plankton production. Correlations in the annual time-series of favourable spawning temperatures suggested relatively strong linkages between the southern areas from Portugal to Senegal. There was no consistent relationship between annual variations in extent of temperature-predicted spawning seasons and observed field abundance of eggs.
TL;DR: There was no observed relationship between the occurrence of prophage induction in the Synechococcus isolates and their resistance to lytic infection, implying that the process of lysogeny is unique in certain marine SyneChococcus strains.
Abstract: The unicellular cyanobacterial species Synechococcus and Prochlorococcus are known to be vital components of marine ecosystems, especially in the vast oligotrophic areas. Lytic cyanophages infecting unicellular phytoplankton are prevalent and have been demonstrated to act as important constraints on community composition contributing to the seasonal succession in genotypes. Lysogeny in Synechococcus has been documented experimentally in natural environments by prophage induction. At this time it is completely unknown how prevalent lysogeny is among Synechococcus populations. This study was performed to document important features such as size, morphology and the incidence of the T4-like capsid portal protein gene (g20) in a group of lytic Synechococcus cyanophages (35 isolates) isolated from the Gulf of Mexico. A group of Synechococcus isolates (24 strains) were isolated concurrently to investigate the virulence and crossinfectivity of the lytic cyanophages and to determine the frequency of lysogeny by detection of inducible prophage. The host range of the cyanophages toward these Synechococcus strains ranged from 1 of 25 (host of isolation only) to 17 of 25 (68%). Of the 35 cyanophage isolates the large majority were myoviruses (94%) and only two (6%) were of the podovirus type. The expected polymerase chain reaction product for g20 was detected in 20 of the phages (63%). The presence of a detectable g20 was associated with lowinfectivity cyanophages at the 90% con¢dence interval. The Synechococcus strains varied in their resistance to lytic infection from 11% to resistance to all of the phage isolates utilized in testing. The prevalence of inducible prophage-like particles was determined in the Synechococcus strains using mitomycin C and enumerating viruses by epi£uorescence microscopy. A statistically signi¢cant increase in viruses was detected in 11 of the strains (46%) in response to mitomycin C. There was no observed relationship between the occurrence of prophage induction in the Synechococcus isolates and their resistance to lytic infection. One putative lysogen was induced by continuous high light and contained a prophage-like particle with a single-stranded DNA (ssDNA) genome. Such a prophage-like particle is unlike any prophage described to date, implying that the process of lysogeny is unique in certain marine Synechococcus strains.
TL;DR: A 14-day boat survey was carried out in the waters surrounding the island of Lampedusa, where fin whales occur at this time of the year, and the information obtained suggests that this area may be an important winter feeding ground for fin whales.
Abstract: The presence of fin whales in the Mediterranean Sea has been documented since ancient times. In spite of this, reliable information on their ecology and distribution is limited to the north-western part of the basin. Recent genetic studies have demonstrated that Mediterranean fin whales comprise a separate population with very limited gene flow with their North Atlantic co-specifics. Although both published and anecdotal information reports their presence in the south central Mediterranean during winter, there is no information on habitat use. In February 2004, a 14-day boat survey was carried out in the waters surrounding the island of Lampedusa, where fin whales occur at this time of the year. A total of 20 fin whale groups (average group size two animals) were encountered. In each encounter the animals were engaged in surface feeding activity. From plankton samples and underwater video, the prey species was identified as the Euphausiid, Nyctiphanes couchi. The information obtained suggests that this area may be an important winter feeding ground for fin whales. The results represent significant new information on fin whale ecology in the Mediterranean, with associated conservation and management implications.
TL;DR: In this article, the authors used a correction factor to estimate the average metal concentrations in a population of worms at a given site, sampling only a limited number of specimens and finding no significant relationship between MTLPs and metal concentrations.
Abstract: The need to use biomonitors representative of the sedimentary compartment has been recognized, particularly in estuaries. Thus, trace metal contamination has been monitored in an infaunal polychaete worm Nereis diversicolor and sediments in the Seine estuary and comparatively in the relatively clean Authie estuary (French coast of the English Channel) over two years taking samples every three months at both sites. No correlations were shown between total metal (Ag, Cd, Cu, Pb, Zn) concentrations in raw sediments and ragworms. Because these worms are known to be good biomonitors of the bioavailabilities of sedimentary trace metals, it follows that total sediment metal concentrations have a poor predictive ecotoxicological value. Using a correction factor to minimize the influence of weight, it is possible to make a good estimation of the average metal concentrations in a population of worms at a given site, sampling only a limited number of specimens. Metallothioneins are often considered to be good biomarkers of the presence of significant availabilities of trace metals. Metallothionein-like proteins (MTLPs) are present in N. diversicolor, but there is no significant relationship between MTLPs and metal concentrations. This situation might result from the importance of metal-containing granules, both extra- and intracellular, in ragworms.
TL;DR: Time-lapse video was used to record movement paths of Strongylocentrotus droebachiensis on a rocky bottom at 8 m depth, both at a grazing front and in recently formed barrens in the wake of the front, providing insight into the foraging behaviour of this species.
Abstract: Time-lapse video was used to record movement paths of Strongylocentrotus droebachiensis on a rocky bottom at 8 m depth, both at a grazing front and in recently formed barrens in the wake of the front. Urchins did not exhibit strong directionality in movement and we did not detect any differences in movement variables between the front and barrens. Density of conspecifics had a negative effect on the speed, move length (distance), and daily displacement of urchins, but did not significantly affect the proportion of time spent moving, the linearity index and the number of moves taken per day. The frequency distributions of turning angles between moves and steps were non-uniformly distributed, indicating directionality in individual paths. A correlated random walk model was used to predict the displacement of urchins through time and provided a good fit with observed data. Our results provide insight into the foraging behaviour of S. droebachiensis and are consistent with previous observations of small-scale movement in this species.
TL;DR: The patterns observed in these contrasting habitats indicate that microscale patchiness of virus abundance may be a common feature of the marine environment and may have important implications for virus–host dynamics and subsequently influence microbial trophodynamics and nutrient cycling in the ocean.
Abstract: The microscale spatial distributions of viruses were investigated in three contrasting environments including oligotrophic open ocean, eutrophic coastal and estuarine habitats. The abundances of two discrete populations of both viruses and heterotrophic bacteria were measured at spatial resolutions of between 1 and 5 cm using purpose-designed microscale sampling equipment and £ow cytometric sample analysis. Within open water samples, virus distributions were characterized by non-normal distributions and by ‘hotspots’ in abundance where concentrations varied by up to 17-fold. In contrast to patterns generally observed at larger spatiotemporal scales, there was no correlation between bacterial and viral abundance or correspondence between bacteria and virus hotspots within these samples. Consequently, strong hotspots and gradients in the virus:bacteria ratio (VBR) were also apparent within samples. Within vertical pro¢les taken from above the sediment ^ water interface within a temperate mangrove estuary, distributions of planktonic viruses were characterized by gradients in abundance, with highest concentrations observed within the 1^2 cm immediately above the sediment surface, and virus distributions were correlated to bacterial abundance (P50.01). The patterns observed in these contrasting habitats indicate that microscale patchiness of virus abundance may be a common feature of the marine environment. This form of heterogeneity may have important implications for virus ^ host dynamics and subsequently in£uence microbial trophodynamics and nutrient cycling in the ocean.
TL;DR: The molecular diversity of dinoflagellate algae in symbiosis with ten species of scleractinian coral, sea anemone and scyphomedusa in the Mediterreanean Sea was investigated and it was concluded that clade temperate-A is prevalent, but not universal, in the Mediterranean.
Abstract: The molecular diversity of dinoflagellate algae of the genus Symbiodinium in symbiosis with ten species of scleractinian coral, sea anemone and scyphomedusa in the Mediterreanean Sea was investigated by restriction analysis and sequencing of polymerase chain reaction-amplified fragments of SSU and LSU rRNA genes. All species bore Symbiodinium of clade A, apart from Bunodeopsis strumosa, which had clade B. The clade A sequences clustered with a previously described group, ‘temperate-A’, known only from the Mediterranean and Atlantic coasts of the UK and France. It is concluded that clade temperate-A is prevalent, but not universal, in the Mediterranean.
TL;DR: The results of a 25-year study of the population dynamics of the common shrimp, Crangon crangon, in the Bristol Channel are presented, and the difficulty of predicting the response of this population to continued climate warming is discussed.
Abstract: The results of a 25-year study of the population dynamics of the common shrimp, Crangon crangon, in the Bristol Channel are presented. The population size varied seasonally, with maximum abundance occurring in early autumn at the completion of annual recruitment. The number of recruits changed greatly between years, and was positively correlated with both average water temperature from January to August, and river flow rate, and negatively correlated with the Winter North Atlantic Oscillation Index. A wide range of other physical and biotic variables was found to have no significant impact on C. crangon abundance. The positive relationship between temperature and C. crangon abundance observed for the Atlantic coast during this study is the opposite of that found for southern North Sea populations. Similar contradictory responses have been noted previously for flatfish such as sole, Solea solea. This suggests that global variables may act to produce different outcomes for Atlantic and North Sea populations of the same species. Over-winter mortality was found to vary with population size so that the adult C. crangon population in spring was found to be remarkably stable, and little influenced by temperature or other variables. The mortality rate increased with population size producing clear evidence of density-dependent control. It is suggested that this stability is linked to the constant limited availability of suitable habitat, with individuals unable to find shelter vulnerable to a range of predatory fish. Given the pivotal role of C. crangon within the northern European estuarine ecosystems, this stability may be a critical component for the overall stability of the system. A particular feature of this study was the exceptional recruitment observed in October 2002. This did not result in any subsequent increase in adult C. crangon numbers, possibly because there was a synchronous increase in a wide range of predators. While the adult population has remained stable and showed no temporal trend, there has been an increase in both the average magnitude and between year variability in recruitment, which can be related predominately to the recent increase in water temperature. The difficulty of predicting the response of this population to continued climate warming is discussed. If temperature continues to rise, the present power law describing the increase in recruitment with temperature must inevitably break down. If this were to occur, the future trajectory of the C. crangon population could not be predicted, and the continued stability of this ecosystem would no longer be assured.
TL;DR: The pattern and energetics of reproduction in the Atlantic vent mussel B. azoricus closely resembles that found in the coastal mussel Mytilus edulis, which has been described as an adaptation for optimizing the timing of reproduction against a background of seasonally-varying food availability.
Abstract: Here we present evidence of seasonal reproduction in the deep-sea vent mussel Bathymodiolus azoricus, a dominant member of the Mid-Atlantic Ridge (MAR) hydrothermal fauna in the Azores region. This is the first time that seasonal reproduction has been suggested for any deep-sea vent organism. This discovery was made possible by the use of novel, acoustically-retrievable cages, which allowed us to extend the frequency and temporal range of sampling that was previously limited to the summer months. The main spawning peak, at the Menez Gwen vent field (840 m) occurs in late December-January and shows a correlation with a winter-spring bloom in primary production in the euphotic zone. Our results suggest that this surface-derived material may act as both a food source for the dispersing mussel larvae and as a reproductive cue/supplementary nutritional source for the adult mussels. Further evidence of a dependence on photosynthetic inputs comes from the relationship between particulate feeding levels, which themselves correlate with the phytoplankton peak, and the amounts of storage tissue in the mantle, which ultimately gets converted into gonad. Thus, the pattern and energetics of reproduction in the Atlantic vent mussel B. azoricus closely resembles that found in the coastal mussel Mytilus edulis, which has been described as an adaptation for optimizing the timing of reproduction against a background of seasonally-varying food availability. This discovery emphasizes the complexity of the nutritional pathways found in some deep-sea chemosynthetic environments and highlights the need for more time-series studies.
TL;DR: An analytical method for the simultaneous determination of five booster biocides (Sea-Nine 211, Dichlofluanid, Duiron, Irgarol 1051, M1 and Pyrithiones) and degradation product of M1 in sediment from Vietnam was developed by LC/MS-MS as discussed by the authors.
Abstract: An analytical method for the simultaneous determination of five booster biocides (Sea-Nine 211, Dichlofluanid, Duiron, Irgarol 1051 and Pyrithiones) and degradation product of Irgarol 1051 (M1) in sediment from Vietnam was developed by LC/MS-MS. The recovery rates and relative standard deviation of the booster biocides in the sediment were in the range of 71–108% and 1.5–12%, respectively, and the detection limits were in the range of 0.04–2 μg kg−1 dry. An analytical method for the simultaneous determination of three booster biocides (Sea-Nine 211, Duiron and Irgarol 1051) and M1 in clams was also developed by LC/MS-MS. The recovery rates and relative standard deviations of the booster biocides in the biological samples were in the range of 60–99% and 3.4–6.8%, respectively, and the detection limits were in the range of 0.24–1.1 μg kg−1.The booster biocides in sediment from the coastal area of northern and central Vietnam were measured using this analytical method. Sea-Nine 211, Dichlofluanid, Duiron, Irgarol 1051, M1 and Pyrithiones were detected in the range of 0.09–1.3 μg kg−1 dry, <0.10–13 μg kg−1 dry, 0.11–3.0 μg kg−1 dry, 0.05–4.0 μg kg−1 dry, <0.1–0.43 μg kg−1 dry and <2–420 μg kg−1 dry, respectively. The detection frequencies of Dichlofluanid, M1 and Pyrithiones were low. The species and levels of detected booster biocides varied between sampling stations.Irgarol 1051 and its degradation product M1 were not detected in clams.
TL;DR: The authors of as mentioned in this paper found that the species is more common than once thought around Britain and Ireland and an order of magnitude greater than the other apex jellyfish predator found in the region, the leatherback turtle (Dermochelys coriacea).
Abstract: Although modest, these ¢ndings highlight that the species is more common than once thought around Britain and Ireland and an order of magnitude greater than the other apex jelly¢sh predator found in the region, the leatherback turtle (Dermochelys coriacea). Furthermore, the distribution of sun¢sh sightings was inconsistent with the extensive aggregations of Rhizostoma octopus found throughout the study area. The modelled distributions of predator^ prey co-occurrence (using data for all three jelly¢sh species) was less than the observed co-occurrence with the implication that neither jelly¢sh nor sun¢sh were randomly distributed but co-occurred more in the same areas than expected by chance. Finally, observed sun¢sh were typically small (� 1m or less) and seen to either bask or actively swim at the surface.
TL;DR: It is concluded that only the abundance of phages in surface waters showed a clear temporal pattern over a short timescale and the results from a phylogenetic analysis do not suggest that phages from the deeper waters form a distinct subgroup.
Abstract: Cyanophage abundance has been shown to fluctuate over long timescales and with depth, but little is known about how it varies over short timescales. Previous short-term studies have relied on counting total virus numbers and therefore the phages which infect cyanobacteria cannot be distinguished from the total count.
In this study, an isolation-based approach was used to determine cyanophage abundance from water samples collected over a depth profile for a 24 h period from the Indian Ocean. Samples were used to infect Synechococcus sp. WH7803 and the number of plaque forming units (pfu) at each time point and depth were counted. At 10 m phage numbers were similar for most time-points, but there was a distinct peak in abundance at 0100 hours. Phage numbers were lower at 25 m and 50 m and did not show such strong temporal variation. No phages were found below this depth. Therefore, we conclude that only the abundance of phages in surface waters showed a clear temporal pattern over a short timescale. Fifty phages from a range of depths and time points were isolated and purified. The molecular diversity of these phages was estimated using a section of the phage-encoded psbD gene and the results from a phylogenetic analysis do not suggest that phages from the deeper waters form a distinct subgroup.
TL;DR: Acanthopagrus butcheri (A. butcheri) becomes stressed at salinities of 60 and typically dies before they typically die before they reach [similar] 85 as mentioned in this paper, due to high evaporation rates in water volumes that, by summer, are already low as a result of atypically dry winters.
Abstract: Salinities in some normally-closed estuaries in the central south coast of Western Australia are now frequently becoming highly elevated. This is due to: (1) high evaporation rates in water volumes that, by summer, are already low as a result of atypically dry winters; and (2) increased salt run-off following vegetation clearing in the catchments. A few black bream (Acanthopagrus butcheri) died in the basin and lower reaches of the main tributary of Culham inlet when salinities reached [similar] 77 and 67, respectively, and an estimated 1.3 million black bream died in the tributary during the next two months when salinities continued to increase. All black bream in the basin and the lower reaches of the tributary of another estuary were apparently killed when salinities reached [similar] 83 1385. It is proposed that A. butcheri becomes stressed at salinities of 60 and typically die before they reach [similar] 85. In both estuaries, a rock bar in the tributary prevented black bream from moving to refugia in upstream areas where salinities were lower.
TL;DR: Macrofaunal assemblages inhabiting stable offshore muddy sand substrata responded predictably to the effects of mild organic enrichment arising from sewage-sludge disposal off the north-east coast of England (western North Sea).
Abstract: Macrofaunal assemblages inhabiting stable offshore muddy sand substrata responded predictably to the effects of mild organic enrichment arising from sewage-sludge disposal off the north-east coast of England (western North Sea). At the disposal site, densities were elevated up to two-fold, but classical ‘indicator’ species were only marginally enhanced and there was no evidence of a significant waste-induced change in assemblage structure. The response following cessation of disposal was equally predictable, with a decline in densities to ‘reference’ levels some three years later. However, physical manifestations of disposal, including tomato pips and non-biodegradable artefacts, were still evident after this time. Changes in diversity at selected monitoring stations tended to track each other over time and the employment of treatment/reference ratios and limit values for acceptable change provided a useful model for the simplified expression of trends. Predictions concerning the limited scale and intensity of the effects of sewage-sludge disposal appear to have been met, indicating that the management option of sea disposal was, at the time, an environmentally acceptable one. Temporal trends in the benthic fauna were also correlated with winter values of the North Atlantic Oscillation Index for the preceding year. The densities and variety of species tended to be lower in response to warmer winters characterized by westerly airflows which were commonly encountered in the 1990s. Finally, the increasing importance of extended time-series data for the investigation of man-made impacts on the marine environment is highlighted, along with the accompanying requirement for continuity and quality assurance of sampling programmes.
TL;DR: It is suggested that the conservation priority of a S. spinulosa aggregation could be determined using a scoring system based on a series of physical, biological and temporal characteristic reef features, weighted according to the perceived importance of each feature and augmented with a further score indicating the confidence in the feature score.
Abstract: ‘Reefs’ are listed under Annex I of the Habitats Directive as a marine habitat to be protected by the designation of Special Areas of Conservation. Crucially for the implementation of the Directive, the distinction between what is considered as ‘reef’ and what is not is imprecise, particularly in relation to colonies of the tube-building polychaete Sabellaria spinulosa. Guidelines are proposed for the implementation of the Habitats Directive definition to provide a robust and transparent approach for the benefit of both regulators and offshore industry. Specifically, it is suggested that the conservation priority of a S. spinulosa aggregation could be determined using a scoring system based on a series of physical, biological and temporal characteristic reef features, weighted according to the perceived importance of each feature and augmented with a further score indicating the confidence in the feature score. Suggestions are given as to how these characteristics might be measured and scored, along with an example to illustrate the application of the approach.
TL;DR: Assemblages of fish associated with exposed and sheltered sides of breakwaters and adjacent rocky reefs were sampled at coastal marinas on the north-west coast of Italy as mentioned in this paper.
Abstract: Assemblages of fish associated with exposed and sheltered sides of breakwaters and adjacent rocky reefs were sampled at coastal marinas on the north-west coast of Italy. Contrary to expectations, assemblages associated with the exposed side of artificial breakwaters did not differ from those at adjacent natural rocky reefs. Assemblages of fish associated with the sheltered side of breakwaters did, however, differ from adjacent rocky reefs and, to a lesser extent from the exposed side of the breakwaters. The internal sheltered side of marinas supported fewer species than did the external breakwaters and adjacent reefs and lacked common reef-associated species, such as Chromis chromis and Oblada melanura. In contrast, they supported greater numbers of new recruits of the sparid, Diplodus vulgaris.
TL;DR: The overall diet of E. spinax suggested a fairly generalized benthopelagic foraging behaviour primarily tuned to pelagic macroplankton/microneckton, teleost fish and cephalopods, in part associated with scavenging as a new feeding strategy.
Abstract: Etmopterus spinax is one of the most abundant predators of the upper continental slope off the Algarve (southern Portugal), where it is captured in large quantities in deep-water fisheries. The feeding habits of E. spinax off the Algarve were investigated through the analysis of stomach contents of 376 individuals. Prey composition was described and maturity, sex and size related variations in the diet analysed. The overall diet of E. spinax suggested a fairly generalized benthopelagic foraging behaviour primarily tuned to pelagic macroplankton/microneckton, teleost fish and cephalopods. Sex and maturity related differences in the diet were not significant. Two main ontogenic diet shifts were observed at about 17 and 28 cm total length. Small and medium sized immature sharks had a diet dominated by eurybathic crustaceans, chiefly Meganyctiphanes norvegica and Pasiphaea sivado. Larger individuals consumed more teleosts and cephalopods, in part associated with scavenging as a new feeding strategy. With increasing shark size the diet diversified both in terms of resources exploited and prey size.
TL;DR: There was no consistent response of viral enrichment on total bacterial and diazotroph assemblages at stations with similar environmental conditions, suggesting that untested variables, small spatial scale factors, or stochastic processes influence the outcome of viral activities.
Abstract: This study examined the relationship between viral infection and the richness, diversity and composition of bacterial assemblages in the water column. Viruses were enriched by ultrafiltration, added to water column incubation experiments at 15 locations in the North Atlantic, North Pacific, Gulf of Mexico and Southern California. In a separate experiment, viruses were removed from bacterioplankton by diafiltration at the San Pedro Ocean Time Series Station. Bacterial assemblage composition was observed using a high throughput and sensitive molecular fingerprinting analysis, automated rRNA intergenic spacer analysis (ARISA). Diazotrophs were used as a model functional group to represent rare organisms hypothesized to benefit from viral activity, and their richness and diversity was determined by terminal restriction fragment length polymorphism of a nitrogenasc gene fragment (nifH). The enrichment and removal experiments demonstrated mixed impacts of viral pressure upon bacterial communities, and we observed significant effects of viruses on several microbial parameters in all but two experiments. However, there was no consistent response of viral enrichment on total bacterial and diazotroph assemblages at stations with similar environmental conditions, suggesting that untested variables, small spatial scale factors, or stochastic processes influence the outcome of viral activities. Across all experiments, the relative abundance of the more common operational taxonomic units (OTUs) in fingerprints were not significantly impacted compared to the abundance of rare OTUs. These data indicate that viruses may have significant influence upon community structure of bacterioplankton; however, effects were not consistent between sampling locations nor water masses.
TL;DR: The food and feeding ecology of the striped dolphin, Stenella coeruleoalba, in the oceanic waters of the north-east Atlantic were studied using the stomach contents of 60 striped dolphins caught in the albacore drift-net fishery throughout the summer months of 1992 and 1993 off the Bay of Biscay.
Abstract: The food and feeding ecology of the striped dolphin, Stenella coeruleoalba, in the oceanic waters of the north-east Atlantic were studied using the stomach contents of 60 striped dolphins caught in the albacore drift-net fishery throughout the summer months of 1992 and 1993 off the Bay of Biscay. Thirty-eight per cent of these dolphins were calves (0-1 years old), 25% were juveniles (2-8) and 37% were mature adults (9-32, of which 7 females and 14 males). The diet was found to be primarily composed of fish (39% by mass (M)) and cephalopods (56% M) and secondarily of crustaceans (5% M). The most significant fish family identified was the lanternfish (24% M) with Notoscopelus kroeyeri and Lobianchia gemellarii being predominant. Among squid, the oceanic Teuthowenia megalops and Histioteuthis spp. were the most significant. The pelagic shrimp Sergastes arcticus and Pasiphaea multidentata were the most prevalent crustaceans. Prey sizes ranging from 30 to 170 mm accounted for 80% of the prey items while 80% of the reconstituted biomass consisted of prey measuring between 60 and 270 mm. Prey composition and size-range differed slightly with sex and age or body size of the dolphins. The state of digestion of food remains suggested that predation took place at dusk or during the early hours of the night on which the dolphins were caught.
TL;DR: The data suggested that in the northern Ionian Sea the phytoplankton development was related to phosphorus availability and to ‘nitrogen-rich’ waters, and the picophytoplANKton seasonal trend was significantly correlated to N-compounds as well as to water temperature.
Abstract: Sampling cruises were carried out on three coastal stations of the northern Ionian Sea over one year to investigate the effects of environmental factors on phytoplankton and picophytoplankton composition and succession. Larger phytoplankton (micro and nano fractions) was determined by using the Utermohl settling technique, while picophytoplankton fraction was determined by epifluorescence microscopy. Furthermore, microbiological procedures were applied to investigate cyanobacterial diversity in the studied area. Results suggested that the most striking feature of phytoplankton communities was the high spatial variability in terms of abundance and biomass, which showed specific coastal Mediterranean values. Undetermined phytoflagellates and diatoms were the dominant groups of the Utermohl fraction of phytoplankton, while round to rod-shaped small sized cyanobacteria represented the picophytoplankton fraction. Our data suggested that in the northern Ionian Sea the phytoplankton development was related to phosphorus availability and to 'nitrogen-rich' waters. Also the picophytoplankton seasonal trend was significantly correlated to N-compounds as well as to water temperature. In addition to the typical picoplanktonic Synechococcus, the culture techniques allowed us to isolate and identify cyanobacteria belonging to the pleurocapsalean genus Stanieria and the oscillatoriacean genera Geitlerinema, Leiblenia, Leptolyngbya, Oscillatoria, Pseudanabaena and Spirulina. These species represent a minor fraction of the total cyanobacterial community in terms of biomass, but their importance is related to their contribution to the phytoplankton diversity.