Journal ArticleDOI
A worldwide phylogenetic classification of the Poaceae (Gramineae)
Robert J. Soreng,Paul M. Peterson,Konstantin Romaschenko,Gerrit Davidse,Fernando O. Zuloaga,Emmet J. Judziewicz,Tarciso S. Filgueiras,Jerrold I. Davis,Osvaldo Morrone +8 more
TLDR
Based on recent molecular and morphological studies, this work presents a modern worldwide phylogenetic classification of the 771 grass genera and divides them into 12 subfamilies.Abstract:
Based on recent molecular and morphological studies we present a modern worldwide phylogenetic classification of the ± 12074 grasses and place the 771 grass genera into 12 subfamilies (Anomochlooideae, Aristidoideae, Arundinoideae, Bambusoideae, Chloridoideae, Danthonioideae, Micraioideae, Oryzoideae, Panicoideae, Pharoideae, Puelioideae, and Pooideae), 6 supertribes (Andropogonodae, Arundinarodae, Bambusodae, Panicodae, Poodae, Triticodae), 51 tribes (Ampelodesmeae, Andropogoneae, Anomochloeae, Aristideae, Arundinarieae, Arundineae, Arundinelleae, Atractocarpeae, Bambuseae, Brachyelytreae, Brachypodieae, Bromeae, Brylkinieae, Centotheceae, Centropodieae, Chasmanthieae, Cynodonteae, Cyperochloeae, Danthonieae, Diarrheneae, Ehrharteae, Eragrostideae, Eriachneae, Guaduellieae, Gynerieae, Hubbardieae, Isachneae, Littledaleeae, Lygeeae, Meliceae, Micraireae, Molinieae, Nardeae, Olyreae, Oryzeae, Paniceae, Paspaleae, Phaenospermateae, Phareae, Phyllorachideae, Poeae, Steyermarkochloeae, Stipeae, Streptochaeteae, Streptogyneae, Thysanolaeneae, Triraphideae, Tristachyideae, Triticeae, Zeugiteae, and Zoysieae), and 80 subtribes (Aeluropodinae, Agrostidinae, Airinae, Ammochloinae, Andropogoninae, Anthephorinae, Anthistiriinae, Anthoxanthinae, Arthraxoninae, Arthropogoninae, Arthrostylidiinae, Arundinariinae, Aveninae, Bambusinae, Boivinellinae, Boutelouinae, Brizinae, Buergersiochloinae, Calothecinae, Cenchrinae, Chionachninae, Chusqueinae, Coicinae, Coleanthinae, Cotteinae, Cteniinae, Cynosurinae, Dactylidinae, Dichantheliinae, Dimeriinae, Duthieinae, Eleusininae, Eragrostidinae, Farragininae, Germainiinae, Gouiniinae, Guaduinae, Gymnopogoninae, Hickeliinae, Hilariinae, Holcinae, Hordeinae, Ischaeminae, Loliinae, Melinidinae, Melocanninae, Miliinae, Monanthochloinae, Muhlenbergiinae, Neurachninae, Olyrinae, Orcuttiinae, Oryzinae, Otachyriinae, Panicinae, Pappophorinae, Parapholiinae, Parianinae, Paspalinae, Perotidinae, Phalaridinae, Poinae, Racemobambosinae, Rottboelliinae, Saccharinae, Scleropogoninae, Scolochloinae, Sesleriinae, Sorghinae, Sporobolinae, Torreyochloinae, Traginae, Trichoneurinae, Triodiinae, Tripogoninae, Tripsacinae, Triticinae, Unioliinae, Zizaniinae, and Zoysiinae). In addition, we include a radial tree illustrating the hierarchical relationships among the subtribes, tribes, and subfamilies. We use the subfamilial name, Oryzoideae, over Ehrhartoideae because the latter was initially published as a misplaced rank, and we circumscribe Molinieae to include 13 Arundinoideae genera. The subtribe Calothecinae is newly described and the tribe Littledaleeae is new at that rank.read more
Citations
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Journal ArticleDOI
A worldwide phylogenetic classification of the Poaceae (Gramineae) II: An update and a comparison of two 2015 classifications
Robert J. Soreng,Paul M. Peterson,Konstantin Romaschenko,Gerrit Davidse,Jordan K. Teisher,Lynn G. Clark,Patricia Barberá,Lynn J. Gillespie,Fernando O. Zuloaga +8 more
TL;DR: A new worldwide phylogenetic classification of 11 506 grass species in 768 genera, 12 subfamilies, seven supert tribes, 52 tribes, five supersubtribes, and 90 subtribes is presented and a radial tree illustrating the hierarchical relationships among the subtribes, tribes, and subfam families is included.
Journal ArticleDOI
A portrait of the C4 photosynthetic family on the 50th anniversary of its discovery: species number, evolutionary lineages, and Hall of Fame.
TL;DR: A Hall of Fame comprised of the 40 most significant C4 species is presented, largely because of habitat loss due to elevated CO2 effects, invasive species, and expanded agricultural activities, which are leading threats to the natural C4 flora.
Journal ArticleDOI
Global grass (Poaceae) success underpinned by traits facilitating colonization, persistence and habitat transformation
Hans Peter Linder,Caroline E. R. Lehmann,Caroline E. R. Lehmann,Sally Archibald,Colin P. Osborne,David M. Richardson +5 more
TL;DR: A diverse set of functional traits linked to dispersal, establishment and competitive abilities are identified over the phylogeny of the Poales, spanning the grasses and their relatives, and demonstrated the accumulation of traits since monocots originated in the mid‐Cretaceous.
Journal ArticleDOI
A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions
Jeffery M. Saarela,Sean V. Burke,William P. Wysocki,Matthew D. Barrett,Matthew D. Barrett,Lynn G. Clark,Joseph M. Craine,Paul M. Peterson,Robert J. Soreng,Maria S. Vorontsova,Melvin R. Duvall +10 more
TL;DR: resolution of these and other critical branch points in the phylogeny of Poaceae will help to better understand the selective forces that drove the radiation of the BOP and PACMAD clades comprising more than 99.9% of grass diversity.
Journal ArticleDOI
A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales
Michael R. McKain,Michael R. McKain,Haibao Tang,Joel R. McNeal,Saravanaraj Ayyampalayam,Jerrold I. Davis,Claude W. dePamphilis,Thomas J. Givnish,J. Chris Pires,Dennis W. Stevenson,Jim Leebens-Mack +10 more
TL;DR: Improved resolution of the timing of WGD events in monocot history provides evidence for the influence of polyploidization on functional evolution and species diversification.
References
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Dissertation
Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion
TL;DR: A fast and accurate algorithm that allows ML phylogenetic searches to be performed on datasets consisting of thousands of sequences and the P-GARLI algorithm extends the approach of GARLI to allow simultaneous use of many computer processors.
Manual of Grasses of the United States.
TL;DR: The grasses of the United States are described in detail in this manual, which is intended to be a guide to gardener’s aid in the management of weeds.
Journal ArticleDOI
The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals
Junzou Hiratsuka,Hiroaki Shimada,Robert F. Whittier,Takashi Ishibashi,Masahiro Sakamoto,Masao Mori,Chihiro Kondo,Yasuko Honji,Chong Rong Sun,Bing Yuan Meng,Yu Qing Li,Akira Kanno,Yoko Nishizawa,Atsushi Hirai,Kazuo Shinozaki,Masahiro Sugiura +15 more
TL;DR: The entire chloroplast genome of the monocot rice (Oryza sativa) has been sequenced and comprises 134525 bp and a model invoking illegitimate recombination between tRNA genes is proposed which accounts simultaneously for the origin of this pseudogene, the large inversion and the creation of repeated sequences near the inversion endpoints.
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