Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies.
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TLDR
Btrim is a fast and lightweight software to trim adapters and low quality regions in reads from ultra high-throughput next-generation sequencing machines and can reliably identify barcodes and assign the reads to the original samples.About:
This article is published in Genomics.The article was published on 2011-08-01 and is currently open access. It has received 480 citations till now. The article focuses on the topics: Adapter (computing).read more
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The Impacts of Different Green Manure on Soil Microbial Communities and Crop Health
Yang H,Jiaojiao Niu,Jiaojiao Niu,Tao J,Tao J,Yabing Gu,Yabing Gu,Chao Zhang,Siyuan She,Siyuan She,Wu Chen,Huaqun Yin,Huaqun Yin +12 more
TL;DR: In this paper, the authors investigated soil microbial community composition and structure in four tobacco farmlands, which were treated with different green manure (control, ryegrass, pea and rape), using 16S rRNA gene amplicons sequencing.
Journal ArticleDOI
Bacterial features in tilapia (Oreochromis niloticus) and environments in a goose-tilapia polyculture model
Meng Zhou,Quanyuan Wan,V. Sarath Babu,Qiongju Qiu,Hongyan Kou,Chong Lin,Lijuan Zhao,Ling Yang,Jun Li,Jun Li,Yunmao Huang,Li Lin +11 more
TL;DR: No direct proof supports the pathogenic bacteria were transported from goose to tilapia, but an insight into bacterial characteristics in the polyculture model is given.
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Amino acid residues Ala283 and His421 in the RNA-dependent RNA polymerase of porcine reproductive and respiratory syndrome virus play important roles in viral ribavirin sensitivity and quasispecies diversity.
Debin Tian,Xiang-Jin Meng +1 more
TL;DR: It is indicated that two amino acid residues in the RdRp of porcine reproductive and respiratory syndrome virus play a crucial role in PRRSV replication by affecting the fidelity of its RdRP.
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The Shifts of Diazotrophic Communities in Spring and Summer Associated with Coral Galaxea astreata, Pavona decussata, and Porites lutea.
Yanying Zhang,Yanying Zhang,Qingsong Yang,Juan Ling,Joy D. Van Nostrand,Zhou Shi,Jizhong Zhou,Junde Dong +7 more
TL;DR: The seasonal variations of all diazotrophic communities were significantly correlated with the seasonal shifts of ammonium and nitrate, suggesting that diazOTrophs play an important role in the nitrogen cycle of the coral holobiont.
Journal ArticleDOI
Rapid Evolution of Genes Involved in Learning and Energy Metabolism for Domestication of the Laboratory Rat.
Lin Zeng,Lin Zeng,Chen Ming,Chen Ming,Yan Li,Yan Li,Ling-Yan Su,Ling-Yan Su,Yan-Hua Su,Newton O. Otecko,Newton O. Otecko,He-Qun Liu,Ming-Shan Wang,Yong-Gang Yao,Haipeng Li,Dong-Dong Wu,Ya-Ping Zhang +16 more
TL;DR: Large scale genomes supported a single origin for the laboratory rat, possibly from a sister group to wild rats from Europe/Africa/Middle East, and many artificially selected genes involved in the nervous system were uncovered.
References
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A fast bit-vector algorithm for approximate string matching based on dynamic programming
TL;DR: An algorithm of comparable simplicity that requires only O(kn/w) time by virtue of computing a bit representation of the relocatable dynamic programming matrix for the approximate string matching problem, and is found to be more efficient than the previous results for many choices of k and small.