Open AccessJournal Article
Combining Berendsen Thermostat with Dissipative Particle Dynamics (DPD) for Polymer Simulation
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In this article, the authors presented a new thermostat - theory and simulation results - obtained by combining two thermostats Berendsen and DPD types, which provides a predictable behavior with temperatures that do not deviate from the reference and with thermal rate constant agreement between simulations and theory.Abstract:
In this article we present a new thermostat - theory and simulation results - obtained by combining two thermostats Berendsen and DPD types. The new thermostat provides a predictable behavior with temperatures that do not deviate from the reference and with thermal rate constant agreement between simulations and theory. The presented work can be used for the study of polymer properties.read more
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Advances in Planar Lipid Bilayers and Liposomes
Nicolae Goga,Andrzej J. Rzepiela,de Manuel Sousa Pereira Simoes de Melo,de Alex Vries,Anton Hadar,Albert J. Markvoort,SV Silvia Nedea,Herman J. C. Berendsen +7 more
Journal ArticleDOI
A Parallelization Scheme for New DPD-B Thermostats
TL;DR: This paper presents the MPI parallelization of a new algorithm—DPD-B thermostat—for molecular dynamics simulations using Martini Coarse Grained Water System.
References
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Advances in planar lipid bilayers and liposomes
TL;DR: AdvAdvances in Planar Lipid Bilayers and Liposomes as discussed by the authors cover a broad range of topics, including main arrangements of the reconstituted system, namely planar lipid bilayers as well as spherical liposomes.
Advances in Planar Lipid Bilayers and Liposomes
Nicolae Goga,Andrzej J. Rzepiela,de Manuel Sousa Pereira Simoes de Melo,de Alex Vries,Anton Hadar,Albert J. Markvoort,SV Silvia Nedea,Herman J. C. Berendsen +7 more
Communications in Computer and Information Science
Bo Hu Li,George W. Irwin,Mitsuo Umezu,Minrui Fei,Kang Li,Qinglong Han,Shiwei Ma,Seán McLoone,Luonan Chen +8 more
TL;DR: Talks on Nonsubmodular Optimization and Iterated Sandwich Method are presented for the first time in a public forum.