Book ChapterDOI
Diversity and Taxonomy of Methanogens
David R. Boone,William B. Whitman,Pierre Rouvière +2 more
- pp 35-80
TLDR
This work has shown that methane production is a ubiquitous, defining characteristic of methanogens, a group of microbes that is phylogenetically distinct from eukaryotes and true bacteria.Abstract:
The production of methane is a ubiquitous, defining characteristic of methanogens. The production of methane or any other hydrocarbon as a major catabolic product is unique to this group of microbes, which share many other characteristics that are not common among other microbes. Phylogenetically, methanogens are Archaeobacteria (Woese et al., 1978), a group of microbes that are distinguished from true bacteria by a number of characteristics, including the possession of membrane lipids composed of isoprenoids ether-linked to glycerol or other carbohydrates (De Rosa and Gambacorta, 1988; Jones et al., 1987; Langworthy, 1985), a lack of peptidoglycan containing muramic acid (Kandier and Hippe, 1977), and distinctive ribosomal RNA sequences (Balch et al., 1979; Woese, 1987). This group also includes some extreme halophiles and some extremely thermophilic, sulfur-dependent microbes (Woese, 1987) and is phylogenetically distinct from eukaryotes and true bacteria (Figure 1.1).read more
Citations
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Journal ArticleDOI
Production, oxidation, emission and consumption of methane by soils: A review
Jean Le Mer,Pierre-Armand Roger +1 more
TL;DR: In this article, the anaerobic zones of submerged soils by methanogens and methanotrophs are oxidised into CO2 in the aerobic zones of wetland soils and in upland soils.
Journal ArticleDOI
Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO).
TL;DR: It is completely unclear how important microbial diversity is for the control of trace gas flux at the ecosystem level, and different microbial communities may be part of the reason for differences in trace gas metabolism, e.g., effects of nitrogen fertilizers on CH4 uptake by soil; decrease of CH4 production with decreasing temperature.
Journal ArticleDOI
Methanogenic archaea: ecologically relevant differences in energy conservation.
TL;DR: In methanogens with cytochromes, the first and last steps in methanogenesis from CO2 are coupled chemiosmotically, whereas in methenogens without cyto Chromes, these steps are energetically coupled by a cytoplasmic enzyme complex that mediates flavin-based electron bifurcation.
Journal ArticleDOI
Group-Specific Primer and Probe Sets to Detect Methanogenic Communities Using Quantitative Real-Time Polymerase Chain Reaction
TL;DR: The primer and probe sets designed in this study can be used to detect and quantify the order-level methanogenic groups in anaerobic biological processes and various environments.
Journal ArticleDOI
Biochemistry of methanogenesis: a tribute to Marjory Stephenson:1998 Marjory Stephenson Prize Lecture
TL;DR: In 1933, Stephenson & Stickland published that they had isolated from river mud, by the single cell technique, a methanogenic organism capable of growth in an inorganic medium with formate as the sole carbon source.
References
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Journal ArticleDOI
Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics
Lawrence G. Wayne,Don J. Brenner,R. R. Colwell,Patrick A. D. Grimont,O. Kandler,Micah I. Krichevsky,L. H. Moore,W. E. C. Moore,R. G. E. Murray,Erko Stackebrandt,M. P. Starr,H. G. Truper +11 more
Journal ArticleDOI
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.
TL;DR: It is proposed that a formal system of organisms be established in which above the level of kingdom there exists a new taxon called a "domain." Life on this planet would be seen as comprising three domains, the Bacteria, the Archaea, and the Eucarya, each containing two or more kingdoms.
Journal ArticleDOI
Methanogens: reevaluation of a unique biological group.
TL;DR: The present study focuses on the development and outline of a new treatment based on 16-year-old ribonucleic acid, as well as evidence in support of the new taxonomic treatment.
Journal ArticleDOI
Biogeochemical aspects of atmospheric methane
TL;DR: In this paper, the authors identify and evaluate several constraints on the budget of atmospheric methane, its sources, sinks and residence time, and construct a list of sources and sinks, identities, and sizes.
Journal ArticleDOI
Methanobacillus omelianskii, a Symbiotic Association of Two Species of Bacteria*
TL;DR: The results indicate that M. omelianskii maintained in ethanol media is actually a symbiotic association of the two species.