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Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees

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TLDR
Developments since the last public release include a modern dataset editor with keyword highlighting functionality, seven newly added types of annotation datasets, collaboration support that allows users to share their trees and datasets and various improvements of the web interface and performance.
Abstract
Evolview is an online visualization and management tool for customized and annotated phylogenetic trees. It allows users to visualize phylogenetic trees in various formats, customize the trees through built-in functions and user-supplied datasets and export the customization results to publication-ready figures. Its ‘dataset system’ contains not only the data to be visualized on the tree, but also ‘modifiers’ that control various aspects of the graphical annotation. Evolview is a single-page application (like Gmail); its carefully designed interface allows users to upload, visualize, manipulate and manage trees and datasets all in a single webpage. Developments since the last public release include a modern dataset editor with keyword highlighting functionality, seven newly added types of annotation datasets, collaboration support that allows users to share their trees and datasets and various improvements of the web interface and performance. In addition, we included eleven new ‘Demo’ trees to demonstrate the basic functionalities of Evolview, and five new ‘Showcase’ trees inspired by publications to showcase the power of Evolview in producing publication-ready figures. Evolview is freely available at: http://www.evolgenius.info/evolview/.

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Interactive Tree Of Life (iTOL) v4: recent updates and new developments.

TL;DR: The current version of iTOL v4 introduces four new dataset types, together with numerous new features, and is the first tool which supports direct visualization of Qiime 2 trees and associated annotations.
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GrapeTree : visualization of core genomic relationships among 100,000 bacterial pathogens

TL;DR: GrapeTree is a stand-alone package for investigating phylogenetic trees plus associated metadata and is also integrated into EnteroBase to facilitate cutting edge navigation of genomic relationships among bacterial pathogens.
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Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree.

TL;DR: Ggtree is a comprehensive R package for visualizing and annotating phylogenetic trees with associated data that can also map and visualize associated external data on phylogenies with two general methods.
Journal ArticleDOI

Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees.

TL;DR: The new version of Evolview was designed to provide simple tree uploads, manipulation and viewing options with additional annotation types, and the ‘dataset system’ used for visualizing tree information has evolved substantially from the previous version.
Posted ContentDOI

GrapeTree: Visualization of core genomic relationships among 100,000 bacterial pathogens

TL;DR: G GrapeTree implements a novel minimum spanning tree algorithm to reconstruct genetic relationships despite missing data together with a static “GrapeTree Layout” algorithm to render interactive visualisations of large trees.
References
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Journal ArticleDOI

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

TL;DR: Current version of iTOL introduces numerous new features and greatly expands the number of supported data set types.
Journal ArticleDOI

Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks.

TL;DR: Dendroscope 3 is a new program for working with rooted phylogenetic trees and networks that provides a number of methods for drawing and comparingRoot phylogenetic networks, and for computing them from rooted trees.
Journal ArticleDOI

TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

TL;DR: TreeGraph 2, a GUI-based graphical editor for phylogenetic trees, is developed, which allows automatically combining information from different phylogenetic analyses of a given dataset (or from different subsets of the dataset), and helps to identify and graphically present incongruences.
Journal ArticleDOI

T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks

TL;DR: T-REX (Tree and reticulogram REConstruction) is a web server dedicated to the reconstruction of phylogenetic trees, reticulation networks and to the inference of horizontal gene transfer (HGT) events.
Related Papers (5)
Trending Questions (1)
Is there any tool to explain uploaded phylogenetic tree?

The paper does not mention any specific tool for explaining uploaded phylogenetic trees.