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Journal ArticleDOI

First-principle calculation of reduced masses in vibrational analysis using generalized internal coordinates: some crucial aspects and examples.

Jernej Stare
- 08 May 2007 - 
- Vol. 47, Iss: 3, pp 840-850
TLDR
Reduced masses obtained by this program can be used as a decision tool for selecting the most appropriate internal coordinates for the considered vibrational problem and for the inclusion or omission of the kinetic coupling terms in the vibrational Hamiltonian.
Abstract
In this paper we present and analyze the most essential aspects of reduced masses along generalized internal coordinates. The definition of reduced masses in the internal coordinate formalism is established through the Wilson G-matrix concept and includes sophisticated relations between internal and Cartesian coordinates. Moreover, reduced masses in internal coordinates are, in general, no longer constant but coordinate-dependent. Based on the approach presented earlier [Stare, J.; Balint-Kurti, G. G. J. Phys. Chem. A 2003, 107, 7204-7214] and on our experience with reduced masses discussed in this paper, we have developed a robust program for the calculation of Wilson G-matrix elements and their functional coordinate dependence. The approach is based on the first principles and can be used in virtually any (internal) coordinate set. Since the program allows for projection of any kind of nuclear motion on the selected internal coordinates, the method is particularly suitable for ab initio or DFT potential energy functions calculated by partial geometry optimization. Moreover, reduced masses obtained by this program can be used as a decision tool for selecting the most appropriate internal coordinates for the considered vibrational problem and for the inclusion or omission of the kinetic coupling terms in the vibrational Hamiltonian.

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Citations
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Journal ArticleDOI

Decoding chemical information from vibrational spectroscopy data: Local vibrational mode theory

TL;DR: The LMODEA software as mentioned in this paper performs the local vibrational mode analysis after a harmonic vibrational frequency calculation optionally using measured frequencies as additional input, which provides the highly sought after extension of the Badger rule to polyatomic molecules, and offers a simpler way to derive localized vibrations compared to the complex route via overtone spectroscopy.
Journal ArticleDOI

Improving Vibrational Mode Interpretation Using Bayesian Regression.

TL;DR: This work introduces the use of Bayesian linear regression with automatic relevance determination as a viable approach to decompose the atomic motions along any vibrational mode as a weighted combination of displacements along chemically meaningful internal coordinates.
Journal ArticleDOI

Exceptionally Long Covalent CC Bonds-A Local Vibrational Mode Study.

TL;DR: In this paper, the authors systematically analyzed CC bonding in a diverse set of 53 molecules including clamped bonds, highly sterically strained complexes such as diamondoid dimers, electron deficient species, and di-N,N-dimethylamino-o-carborane to cover the whole spectrum of possibilities for elongating a covalent C-C bond.
Journal ArticleDOI

Harmonic Vibrational Analysis in Delocalized Internal Coordinates.

TL;DR: It is shown that a principal component analysis of a large set of internal coordinates can be used to define a nonredundant set of delocalized internal coordinates suitable for the calculation of harmonic vibrational normal modes.
Journal ArticleDOI

Critical assessment of the FeC and CO bond strength in carboxymyoglobin: a QM/MM local vibrational mode study

TL;DR: A quantitative measure for the intrinsic FeC and CO bond strength in MbCO, as well as for CO⋯H bonding, based on the local vibrational mode analysis, originally developed by Konkoli and Cremer is presented.
References
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Journal ArticleDOI

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