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Journal ArticleDOI

Genetic diversity and differentiation processes in the ploidy series of Olea europaea L.: a multiscale approach from subspecies to insular populations

TLDR
The hierarchical organization of archipelagos in this study provides a framework for testing the evolutionary consequences for polyploid taxa and populations occurring in isolation in Olea europaea.
Abstract
Geographical isolation and polyploidization are central concepts in plant evolution. The hierarchical organization of archipelagos in this study provides a framework for testing the evolutionary consequences for polyploid taxa and populations occurring in isolation. Using amplified fragment length polymorphism and simple sequence repeat markers, we determined the genetic diversity and differentiation patterns at three levels of geographical isolation in Olea europaea: mainland-archipelagos, islands within an archipelago, and populations within an island. At the subspecies scale, the hexaploid ssp. maroccana (southwest Morocco) exhibited higher genetic diversity than the insular counterparts. In contrast, the tetraploid ssp. cerasiformis (Madeira) displayed values similar to those obtained for the diploid ssp. guanchica (Canary Islands). Geographical isolation was associated with a high genetic differentiation at this scale. In the Canarian archipelago, the stepping-stone model of differentiation suggested in a previous study was partially supported. Within the western lineage, an east-to-west differentiation pattern was confirmed. Conversely, the easternmost populations were more related to the mainland ssp. europaea than to the western guanchica lineage. Genetic diversity across the Canarian archipelago was significantly correlated with the date of the last volcanic activity in the area/island where each population occurs. At the island scale, this pattern was not confirmed in older islands (Tenerife and Madeira), where populations were genetically homogeneous. In contrast, founder effects resulted in low genetic diversity and marked genetic differentiation among populations of the youngest island, La Palma.

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Journal ArticleDOI

Phylogenetics of Olea (Oleaceae) based on plastid and nuclear ribosomal DNA sequences: tertiary climatic shifts and lineage differentiation times.

TL;DR: This study indicates the necessity of revising current taxonomic boundaries in Olea and suggests that main lines of evolution were promoted by major Tertiary climatic shifts.
Journal ArticleDOI

On the origins and domestication of the olive: a review and perspectives.

TL;DR: The olive is a relevant model for improving knowledge of domestication processes in clonally propagated perennial crops, particularly those of the Mediterranean Basin, and is argued that more detailed ecological genomics studies of wild and cultivated olives are crucial to improve understanding of olive domestication.
Journal ArticleDOI

Do island plant populations really have lower genetic variation than mainland populations? Effects of selection and distribution range on genetic diversity estimates

TL;DR: This study suggests that identification and removal of markers potentially affected by selection should be routinely implemented in estimates of GD, particularly if different lineages are compared, and provides compelling evidence that the expectation of low GD cannot be generalized to island plant populations.
Journal ArticleDOI

Genetic diversity in Malus ×domestica (Rosaceae) through time in response to domestication

TL;DR: The improvement bottleneck in domesticated apples appears to be mild or nonexistent, in contrast to improvement bottlenecks in many annual and perennial fruit crops, as documented from the literature survey.
Journal ArticleDOI

Population size and time since island isolation determine genetic diversity loss in insular frog populations.

TL;DR: The results suggest that decreased genetic diversity and genetic differentiations among insular populations may have been caused by random genetic drift following isolation by rising sea levels during the Holocene.
References
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Journal Article

PHYLIP-Phylogeny inference package (Version 3.2)

J. Felsenstein
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genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

TL;DR: Genalex is a user-friendly cross-platform package that runs within Microsoft Excel, enabling population genetic analyses of codominant, haploid and binary data.
Journal ArticleDOI

AFLP: a new technique for DNA fingerprinting.

TL;DR: The AFLP technique provides a novel and very powerful DNA fingerprinting technique for DNAs of any origin or complexity that allows the specific co-amplification of high numbers of restriction fragments.
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Mathematical model for studying genetic variation in terms of restriction endonucleases

TL;DR: A mathematical model for the evolutionary change of restriction sites in mitochondrial DNA is developed and a measure called "nucleotide diversity" is proposed to express the degree of polymorphism in a population at the nucleotide level.
Journal ArticleDOI

Isolation by Distance.

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