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Genome-wide transcriptome analysis of hippocampus in rats indicated that TLR/NLR signaling pathway was involved in the pathogenisis of depressive disorder induced by chronic restraint stress.

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TLDR
Acupuncture reversed the upregulation of gene sets that were related to inflammatory response, innate immunity and immune response (including toll-like receptor signalling pathway and NOD like receptors signalling pathway), which might be critical for the pathogenesis of depression and provide evidence for the antidepressive effects of acupuncture.
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This article is published in Brain Research Bulletin.The article was published on 2017-09-01. It has received 21 citations till now. The article focuses on the topics: Innate immune system & Immune system.

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Transcriptome Analysis on Maternal Separation Rats With Depression-Related Manifestations Ameliorated by Electroacupuncture

TL;DR: Results suggest that EA at GV20 and GV29 ameliorates depression-related manifestations by regulating the expression of multiple genes.
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Signal Transduction Pathways of Acupuncture for Treating Some Nervous System Diseases.

TL;DR: Signal transduction pathways through which acupuncture treats nervous system diseases are reviewed, finding that acupuncture affects synaptic plasticity, causes an increase in neurotrophic factors, and results in neuroprotection, cell proliferation, antiapoptosis, antioxidant activity, anti-inflammation, and maintenance of the blood-brain barrier.
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Validity of chronic restraint stress for modeling anhedonic-like behavior in rodents: a systematic review and meta-analysis

TL;DR: A meta-analysis of studies that used the CRS paradigm to evaluate anhedonic-like behavior in rodents was focused on a core symptom of depression (anhedonia) as the main endpoint of the model and identified species-dependent susceptibility to restraint stress.
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Factor analysis of electroacupuncture and selective serotonin reuptake inhibitors for major depressive disorder: an 8-week controlled clinical trial

TL;DR: Electroacupuncture appeared to result in greater symptom improvement than SSRI treatment with respect to anxiety/somatisation and feelings of despair, but as a potential therapy for MDD, the results of this secondary analysis should be interpreted cautiously.
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The Role of Potassium Channels in Chronic Stress-Induced Brain Injury

TL;DR: It is suggested that potassium channel function is disrupted in CSBI, and thatassium channel regulators may function as anti-CSBI drugs.
References
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Journal ArticleDOI

Controlling the false discovery rate: a practical and powerful approach to multiple testing

TL;DR: In this paper, a different approach to problems of multiple significance testing is presented, which calls for controlling the expected proportion of falsely rejected hypotheses -the false discovery rate, which is equivalent to the FWER when all hypotheses are true but is smaller otherwise.
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

TL;DR: By following this protocol, investigators are able to gain an in-depth understanding of the biological themes in lists of genes that are enriched in genome-scale studies.
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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

TL;DR: EdgeR as mentioned in this paper is a Bioconductor software package for examining differential expression of replicated count data, which uses an overdispersed Poisson model to account for both biological and technical variability and empirical Bayes methods are used to moderate the degree of overdispersion across transcripts, improving the reliability of inference.
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Mapping and quantifying mammalian transcriptomes by RNA-Seq.

TL;DR: Although >90% of uniquely mapped reads fell within known exons, the remaining data suggest new and revised gene models, including changed or additional promoters, exons and 3′ untranscribed regions, as well as new candidate microRNA precursors.
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TopHat: discovering splice junctions with RNA-Seq

TL;DR: The TopHat pipeline is much faster than previous systems, mapping nearly 2.2 million reads per CPU hour, which is sufficient to process an entire RNA-Seq experiment in less than a day on a standard desktop computer.
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