scispace - formally typeset
Open AccessProceedings Article

Inductive Representation Learning on Large Graphs

TLDR
GraphSAGE as mentioned in this paper is a general, inductive framework that leverages node feature information (e.g., text attributes) to efficiently generate node embeddings instead of training individual embedding for each node.
Abstract
Low-dimensional embeddings of nodes in large graphs have proved extremely useful in a variety of prediction tasks, from content recommendation to identifying protein functions. However, most existing approaches require that all nodes in the graph are present during training of the embeddings; these previous approaches are inherently transductive and do not naturally generalize to unseen nodes. Here we present GraphSAGE, a general, inductive framework that leverages node feature information (e.g., text attributes) to efficiently generate node embeddings. Instead of training individual embeddings for each node, we learn a function that generates embeddings by sampling and aggregating features from a node's local neighborhood. Our algorithm outperforms strong baselines on three inductive node-classification benchmarks: we classify the category of unseen nodes in evolving information graphs based on citation and Reddit post data, and we show that our algorithm generalizes to completely unseen graphs using a multi-graph dataset of protein-protein interactions.

read more

Content maybe subject to copyright    Report

Citations
More filters
Posted ContentDOI

ProteinGCN: Protein model quality assessment using Graph Convolutional Networks

TL;DR: This work trains a graph convolutional network with nodes representing protein atoms and edges connecting spatially adjacent atom pairs on the dataset Rosetta-300k which contains a set of 300k conformations from 2,897 proteins and shows that the proposed architecture, ProteinGCN, is capable of predicting both local and global accuracies in protein models at state-of-the-art levels.
Posted Content

Bipartite Graph Embedding via Mutual Information Maximization.

TL;DR: A bipartite graph embedding called BiGI is proposed to capture such global properties by introducing a novel local-global infomax objective and achieves consistent and significant improvements over state-of-the-art baselines.
Journal ArticleDOI

Learning Robust Graph-Convolutional Representations for Point Cloud Denoising

TL;DR: A deep neural network based on graph-convolutional layers that can elegantly deal with the permutation-invariance problem encountered by learning-based point cloud processing methods is proposed and significantly outperforms state-of-the-art methods on a variety of metrics.
Proceedings ArticleDOI

Primitive Representation Learning for Scene Text Recognition

TL;DR: Zhang et al. as discussed by the authors proposed a primitive representation learning method that aims to exploit intrinsic representations of scene text images, which are transformed into high-level visual text representations by graph convolutional networks.
Posted ContentDOI

Multiscale and integrative single-cell Hi-C analysis with Higashi

TL;DR: Higashi is a new algorithm that achieves state-of-the-art analysis of scHi-C data based on hypergraph representation learning and is applicable to studying single-cell 3D genomes in a wide range of biological contexts.
Related Papers (5)