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Microsatellites and the Genetics of Highly Selfing Populations in the Freshwater Snail Bulinus truncatus

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TLDR
Examination of the consequences of selfing and bottlenecks on genetic polymorphism using microsatellite markers in 14 natural populations of the hermaphrodite freshwater snail Bulinus truncatus revealed an unexpectedly high levels of genetic variation.
Abstract
Hermaphrodite tropical freshwater snails provide a good opportunity to study the effects of mating system and genetic drift on population genetic structure because they are self-fertile and they occupy transient patchily distributed habitats (ponds). Up to now the lack of detectable allozyme polymorphism prevented any intrapopulation studies. In this paper, we examine the consequences of selfing and bottlenecks on genetic polymorphism using microsatellite markers in 14 natural populations (under a hierarchical sampling design) of the hermaphrodite freshwater snail Bulinus truncatus. These population genetics data allowed us to discuss the currently available mutation models for microsatellite sequences. Microsatellite markers revealed an unexpectedly high levels of genetic variation with <=41 alleles for one locus and gene diversity of 0.20-0.75 among populations. The values of any estimator of F(is) indicate high selfing rates in all populations. Linkage disequilibria observed at all loci for some populations may also indicate high levels of inbreeding. The large extent of genetic differentiation measured by F(st), R(st) or by a test for homogeneity between genic distributions is explained by both selfing and bottlenecks. Despite a limited gene flow, migration events could be detected when comparing different populations within ponds.

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Journal ArticleDOI

Microsatellites, from molecules to populations and back

TL;DR: Interspecific studies show that microsatellites are poor markers for phylogenetic inference, however, these studies are fuelling discussions on directional mutation and the role of selection and recombination in their evolution, Nonetheless, it remains true that microSatellites may be considered as good, neutral mendelian markers.
Journal ArticleDOI

Genetic Data Analysis

TL;DR: The objectives of BIOS 781 are to present basic population and quantitative genetic principles, including classical genetics, chromosomal theory of inheritance, and meiotic recombination, and methods for genome-wide association and stratification control.
Journal ArticleDOI

Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability

TL;DR: The model provides a prerequisite for and an alternative to regional FST analyses, which often simply assume regional equilibrium, thus potentially leading to erroneous and misleading inferences regarding regional population structure.
Journal ArticleDOI

RST Calc: a collection of computer programs for calculating estimates of genetic differentiation from microsatellite data and determining their significance

TL;DR: Examination of current approaches for calculating estimates of RST is examined and a weighting scheme based on the transformation of allele sizes at loci across data sets is suggested, which yields an estimator of R ST analogous to the θ estimators of FST.
Journal ArticleDOI

Microsatellite variation and fine‐scale population structure in the wood frog (Rana sylvatica)

TL;DR: It is hypothesized that the few significant differences among neighbouring populations at the finest scale may be a transient effect of extinction–recolonization founder events, driven by periodic drying of wetlands in this hydrologically dynamic landscape.
References
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Journal ArticleDOI

Estimating F-statistics for the analysis of population structure.

TL;DR: The purpose of this discussion is to offer some unity to various estimation formulae and to point out that correlations of genes in structured populations, with which F-statistics are concerned, are expressed very conveniently with a set of parameters treated by Cockerham (1 969, 1973).
Journal ArticleDOI

Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.

TL;DR: In this article, a framework for the study of molecular variation within a single species is presented, where information on DNA haplotype divergence is incorporated into an analysis of variance format, derived from a matrix of squared-distances among all pairs of haplotypes.
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