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Novel Automated Method for Minirhizotron Image Analysis: Root Detection using Curvelet Transform

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TLDR
In this paper, a new method is introduced for distinguishing roots and background based on their digital curvelet transform in minirhizotron images, where the nonlinear mapping is applied to sub-band curvelet components followed by boundary detection using energy optimization concept.
Abstract
A B S T R A C T In this article a new method is introduced for distinguishing roots and background based on their digital curvelet transform in minirhizotron images. In the proposed method, the nonlinear mapping is applied to sub-band curvelet components followed by boundary detection using energy optimization concept. The curvelet transform has the excellent capability in detecting roots with different orientations and contrasts, thanks to its better sparse representation and more directionality feature than existing approaches. Furthermore, adapting the parameters of the mapping function due to curvelet coefficients is very beneficial for magnifying weak ridges as well as better compatibility with different minirhizotron images. Performance of the proposed method is evaluated on several minirhizotron images in two different scenarios. In the first scenario, images contain several roots, while the second scenario belongs to no-root images, which increases the chance of false detections. The results show that the detection rate of the proposed method is 4 to 27 percent better than its alternatives, in presence of zero false detection. Furthermore, it is shown that better characterization of roots by proposed algorithm does not lead to extract more false objects compared to the results of the other examined algorithms.

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Citations
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Journal ArticleDOI

Root identification in minirhizotron imagery with multiple instance learning

TL;DR: In this paper, the authors proposed a multiple instance learning (MIL) algorithm to automatically perform root detection and segmentation in minirhizotron imagery using only image-level labels.
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Weakly Supervised Minirhizotron Image Segmentation with MIL-CAM

TL;DR: The proposed MIL-CAM approach outperforms other attention map and multiple instance learning methods for localization of root objects in minirhizotron imagery and re-weights the root versus soil pixels during analysis for improved performance due to the heavy imbalance between soil and root pixels.
Book ChapterDOI

Weakly Supervised Minirhizotron Image Segmentation with MIL-CAM

TL;DR: In this article, a multiple instance learning class activation map (MIL-CAM) approach was proposed for pixel-level minirhizotron image segmentation given weak image-level labels.
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Duck Egg Sexing by Eccentricity Determination Using Image Processing

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Journal ArticleDOI

Root Identification in Minirhizotron Imagery with Multiple Instance Learning.

TL;DR: This paper aims to address the problem of labeling data at the image level (rather than the individual root orRoot pixel level) and train algorithms to perform individual root pixel level segmentation using MIL strategies and shows that MIL methods improve root segmentation in challenging minirhizotron imagery and reduce the labeling burden.
References
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Journal ArticleDOI

Fast Discrete Curvelet Transforms

TL;DR: This paper describes two digital implementations of a new mathematical transform, namely, the second generation curvelet transform in two and three dimensions, based on unequally spaced fast Fourier transforms, while the second is based on the wrapping of specially selected Fourier samples.
Journal ArticleDOI

Plant root growth, architecture and function

TL;DR: Some key biotic and abiotic constraints on root development and function in the soil environment are examined and some of the adaptations roots have evolved to counter such stresses discussed.
Proceedings Article

Content-based Image Retrieval Using Gabor Texture Features

TL;DR: A image retrieval method based on Gabor filter is presented and texture features are found by calculating the mean and variation of the Gabor filtered image.
Journal ArticleDOI

Estimating length, average diameter and surface area of roots using two different Image analyses systems

TL;DR: In this article, the performance of two image analyses programs using different measuring algorithms was compared: a commercial package WinRHIZO and a freeware ROOTEDGE, and the results suggest that both programs provide fairly correct measurements of root morphological parameters.
Journal ArticleDOI

Automatic discrimination of fine roots in minirhizotron images.

TL;DR: In this paper, a root detection and discrimination algorithm was proposed to detect and measure individual roots in minirhizotron images using the Adaboost algorithm, which achieved a true positive rate of 89-94% and false positive rates of 3-7% when applied to nontraining images of the species for which they were developed.