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Numerical Recipes in C: The Art of Scientific Computing

TLDR
Numerical Recipes: The Art of Scientific Computing as discussed by the authors is a complete text and reference book on scientific computing with over 100 new routines (now well over 300 in all), plus upgraded versions of many of the original routines, with many new topics presented at the same accessible level.
Abstract
From the Publisher: This is the revised and greatly expanded Second Edition of the hugely popular Numerical Recipes: The Art of Scientific Computing. The product of a unique collaboration among four leading scientists in academic research and industry, Numerical Recipes is a complete text and reference book on scientific computing. In a self-contained manner it proceeds from mathematical and theoretical considerations to actual practical computer routines. With over 100 new routines (now well over 300 in all), plus upgraded versions of many of the original routines, this book is more than ever the most practical, comprehensive handbook of scientific computing available today. The book retains the informal, easy-to-read style that made the first edition so popular, with many new topics presented at the same accessible level. In addition, some sections of more advanced material have been introduced, set off in small type from the main body of the text. Numerical Recipes is an ideal textbook for scientists and engineers and an indispensable reference for anyone who works in scientific computing. Highlights of the new material include a new chapter on integral equations and inverse methods; multigrid methods for solving partial differential equations; improved random number routines; wavelet transforms; the statistical bootstrap method; a new chapter on "less-numerical" algorithms including compression coding and arbitrary precision arithmetic; band diagonal linear systems; linear algebra on sparse matrices; Cholesky and QR decomposition; calculation of numerical derivatives; Pade approximants, and rational Chebyshev approximation; new special functions; Monte Carlo integration in high-dimensional spaces; globally convergent methods for sets of nonlinear equations; an expanded chapter on fast Fourier methods; spectral analysis on unevenly sampled data; Savitzky-Golay smoothing filters; and two-dimensional Kolmogorov-Smirnoff tests. All this is in addition to material on such basic top

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Citations
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Journal ArticleDOI

Gradient-based learning applied to document recognition

TL;DR: In this article, a graph transformer network (GTN) is proposed for handwritten character recognition, which can be used to synthesize a complex decision surface that can classify high-dimensional patterns, such as handwritten characters.
Journal ArticleDOI

A Tutorial on Support Vector Machines for Pattern Recognition

TL;DR: There are several arguments which support the observed high accuracy of SVMs, which are reviewed and numerous examples and proofs of most of the key theorems are given.
Journal ArticleDOI

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

TL;DR: A simplified scoring system is proposed that performs well for reducing CPU time and increasing the accuracy of alignments even for sequences having large insertions or extensions as well as distantly related sequences of similar length.
Journal ArticleDOI

Power-Law Distributions in Empirical Data

TL;DR: This work proposes a principled statistical framework for discerning and quantifying power-law behavior in empirical data by combining maximum-likelihood fitting methods with goodness-of-fit tests based on the Kolmogorov-Smirnov (KS) statistic and likelihood ratios.
Journal ArticleDOI

Base-calling of automated sequencer traces using Phred. I. accuracy assessment

TL;DR: In this article, a base-calling program for automated sequencer traces, phred, with improved accuracy was proposed. But it was not shown to achieve a lower error rate than the ABI software, averaging 40%-50% fewer errors in the data sets examined independent of position in read, machine running conditions, or sequencing chemistry.
References
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Book

Monte Carlo methods

TL;DR: The general nature of Monte Carlo methods can be found in this paper, where a short resume of statistical terms is given, including random, pseudorandom, and quasirandom numbers.
Book

Monte Carlo methods

TL;DR: In this paper, Monte Carlo Evaluation of Finite-Dimensional Integrals (FDIM) is used to evaluate finite-dimensional integral functions. But Monte Carlo evaluation of FDIM is not suitable for simulation of stochastic systems.
Book

Applied statistics: analysis of variance and regression

TL;DR: In this paper, one-way analysis of variance with fixed effects was used to test whether the data fit the one-Way ANOVA model. But the results showed that the model was not robust enough to handle large numbers of samples.