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Practical implementation of nonlinear time series methods: The TISEAN package

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TLDR
A variety of algorithms for data representation, prediction, noise reduction, dimension and Lyapunov estimation, and nonlinearity testing are discussed with particular emphasis on issues of implementation and choice of parameters.
Abstract
Nonlinear time series analysis is becoming a more and more reliable tool for the study of complicated dynamics from measurements. The concept of low-dimensional chaos has proven to be fruitful in the understanding of many complex phenomena despite the fact that very few natural systems have actually been found to be low dimensional deterministic in the sense of the theory. In order to evaluate the long term usefulness of the nonlinear time series approach as inspired by chaos theory, it will be important that the corresponding methods become more widely accessible. This paper, while not a proper review on nonlinear time series analysis, tries to make a contribution to this process by describing the actual implementation of the algorithms, and their proper usage. Most of the methods require the choice of certain parameters for each specific time series application. We will try to give guidance in this respect. The scope and selection of topics in this article, as well as the implementational choices that have been made, correspond to the contents of the software package TISEAN which is publicly available from this http URL . In fact, this paper can be seen as an extended manual for the TISEAN programs. It fills the gap between the technical documentation and the existing literature, providing the necessary entry points for a more thorough study of the theoretical background.

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Citations
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A method for the correlation dimension estimation for on-line condition monitoring of large rotating machinery

TL;DR: A robust method for the correlation dimension estimation in an automatic way for its implementation in on-line condition monitoring of large rotating machinery by means of the calculation of well-known analytic models as Lorenz attractor, van der Pol oscillator and Henon Map.
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Time Series Analysis of Spontaneous Upper-Extremity Movements of Premature Infants With Brain Injuries

TL;DR: The nonlinear time series analysis indicated that spontaneous movements of premature infants have nonlinear, chaotic, dynamic characteristics and the movements of the infants with brain injuries were characterized by larger dimensionality, and they were more unstable and unpredictable than those of infants without brain injuries.
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Chaos and generalised multistability in a mesoscopic model of the electroencephalogram

TL;DR: In this paper, the authors present evidence for chaos and generalised multistability in a mesoscopic model of the electroencephalogram (EEG) in a two-dimensional plane of the ten-dimensional volume of initial conditions.
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Distinguishing quasiperiodic dynamics from chaos in short-time series.

TL;DR: The histogram of the return times in a recurrence plot is introduced to disclose the recurrence property consisting of only three peaks imposed by Slater's theorem, and the approach is demonstrated to be efficient in recognizing regular and chaotic trajectories of a Hamiltonian system with mixed phase space.
Posted Content

On cycle-to-cycle heat release variations in a simulated spark ignition heat engine

TL;DR: In this paper, the cycle-by-cycle variations in heat release for a simulated spark-ignited engine are analyzed within a turbulent combustion model in terms of some basic parameters: the characteristic length of the unburned eddies entrained within the flame front, a characteristic turbulent speed, and the location of the ignition kernel.
References
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Numerical recipes

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Measuring the Strangeness of Strange Attractors

TL;DR: In this paper, the correlation exponent v is introduced as a characteristic measure of strange attractors which allows one to distinguish between deterministic chaos and random noise, and algorithms for extracting v from the time series of a single variable are proposed.
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Ergodic theory of chaos and strange attractors

TL;DR: A review of the main mathematical ideas and their concrete implementation in analyzing experiments can be found in this paper, where the main subjects are the theory of dimensions (number of excited degrees of freedom), entropy (production of information), and characteristic exponents (describing sensitivity to initial conditions).
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Independent coordinates for strange attractors from mutual information.

TL;DR: In this paper, the mutual information I is examined for a model dynamical system and for chaotic data from an experiment on the Belousov-Zhabotinskii reaction.