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Practical implementation of nonlinear time series methods: The TISEAN package

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TLDR
A variety of algorithms for data representation, prediction, noise reduction, dimension and Lyapunov estimation, and nonlinearity testing are discussed with particular emphasis on issues of implementation and choice of parameters.
Abstract
Nonlinear time series analysis is becoming a more and more reliable tool for the study of complicated dynamics from measurements. The concept of low-dimensional chaos has proven to be fruitful in the understanding of many complex phenomena despite the fact that very few natural systems have actually been found to be low dimensional deterministic in the sense of the theory. In order to evaluate the long term usefulness of the nonlinear time series approach as inspired by chaos theory, it will be important that the corresponding methods become more widely accessible. This paper, while not a proper review on nonlinear time series analysis, tries to make a contribution to this process by describing the actual implementation of the algorithms, and their proper usage. Most of the methods require the choice of certain parameters for each specific time series application. We will try to give guidance in this respect. The scope and selection of topics in this article, as well as the implementational choices that have been made, correspond to the contents of the software package TISEAN which is publicly available from this http URL . In fact, this paper can be seen as an extended manual for the TISEAN programs. It fills the gap between the technical documentation and the existing literature, providing the necessary entry points for a more thorough study of the theoretical background.

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Citations
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Nonlinear analysis of seasonality and stochasticity of the Indus River

TL;DR: In this article, two different forecasting methods are utilized to analyze the long-term seasonal behavior of the Indus River system and assesses whether the strong seasonal behaviour is dominated by the presence of low-dimensional nonlinear dynamics, or whether the periodic behaviour is simply immersed in random fluctuations.
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Empirical evidences of persistence and dynamical chaos in solar–terrestrial phenomena

TL;DR: A brief review of selected publications concerning dynamical chaos and persistence in various solar-terrestrial phenomena ranging from solar activity to climate dynamics can be found in this article, where the authors introduce the concepts of dynamical (deterministic) chaos and fractional Brownian motion.
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Variations in Non-Linearity in Vertical Distribution of Microwave Radio Refractivity

TL;DR: In this article, radio refractivity values obtained for difierent heights (ground surface, 50m, 100m and 150m) over a tropical station, Akure, South-Western Nigeria using in-situ data over a period of flve years has been investigated for chaos.
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A comprehensive study of the delay vector variance method for quantification of nonlinearity in dynamical systems.

TL;DR: This comprehensive study creates a numerical and experimental benchmark for structurally dynamical systems where output-only information is typically available, especially in the context of DVV, and allows for comparative analysis between different systems driven by the similar input.
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Non-linear asymmetric interdependencies in the electroencephalogram of healthy term neonates during sleep

TL;DR: It is concluded that the index might be useful to define patterns of EEG interdependencies in healthy neonates, thereby allowing the early detection of brain dysfunctions.
References
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Numerical recipes

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Measuring the Strangeness of Strange Attractors

TL;DR: In this paper, the correlation exponent v is introduced as a characteristic measure of strange attractors which allows one to distinguish between deterministic chaos and random noise, and algorithms for extracting v from the time series of a single variable are proposed.
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Ergodic theory of chaos and strange attractors

TL;DR: A review of the main mathematical ideas and their concrete implementation in analyzing experiments can be found in this paper, where the main subjects are the theory of dimensions (number of excited degrees of freedom), entropy (production of information), and characteristic exponents (describing sensitivity to initial conditions).
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Independent coordinates for strange attractors from mutual information.

TL;DR: In this paper, the mutual information I is examined for a model dynamical system and for chaotic data from an experiment on the Belousov-Zhabotinskii reaction.