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Autumn A. Cuellar
Researcher at University of Auckland
Publications - 5
Citations - 3569
Autumn A. Cuellar is an academic researcher from University of Auckland. The author has contributed to research in topics: CellML & Physiome. The author has an hindex of 5, co-authored 5 publications receiving 3389 citations.
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Journal ArticleDOI
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Michael Hucka,Andrew Finney,Herbert M. Sauro,Hamid Bolouri,Hamid Bolouri,John Doyle,Hiroaki Kitano,Adam P. Arkin,Benjamin Bornstein,Dennis Bray,Athel Cornish-Bowden,Autumn A. Cuellar,S. Dronov,E. D. Gilles,Martin Ginkel,V. Gor,Igor Goryanin,W. J. Hedley,T. C. Hodgman,J.-H.S. Hofmeyr,Peter Hunter,Nick Juty,J. L. Kasberger,Andreas Kremling,Ursula Kummer,N Le Novère,Leslie M. Loew,D. Lucio,Pedro Mendes,E. Minch,Eric Mjolsness,Yoichi Nakayama,Melanie R. Nelson,Poul M. F. Nielsen,T. Sakurada,James C. Schaff,Bruce E. Shapiro,Thomas S. Shimizu,H. D. Spence,Jörg Stelling,Koichi Takahashi,Masaru Tomita,John Wagner,J. Wang +43 more
TL;DR: This work summarizes the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks, a software-independent language for describing models common to research in many areas of computational biology.
Journal ArticleDOI
An Overview of CellML 1.1, a Biological Model Description Language
Autumn A. Cuellar,Catherine M. Lloyd,Poul M. F. Nielsen,David Bullivant,David P. Nickerson,Peter Hunter +5 more
TL;DR: CellML 1.1 can be used in conjunction with CellML Metadata to provide a complete description of the structure and underlying mathematics of biological models to build complex systems of models that expand and reuse previously published models.
Journal ArticleDOI
The CellML 1.1 Specification.
Autumn A. Cuellar,W. J. Hedley,Melanie R. Nelson,Catherine M. Lloyd,Matt D. B. Halstead,David Bullivant,David P. Nickerson,Peter Hunter,Poul M. F. Nielsen +8 more
TL;DR: In this article, the authors describe an XML-based language for describing and exchanging models of cellular and subcellular processes, called CellML 1.1, which is used to define the underlying mathematics of models.
Book
CellML 1.1 Specification
Per Østergaard Nielsen,Matt D. B. Halstead,David Bullivant,David P. Nickerson,W. J. Hedley,Melanie R. Nelson,Catherine M. Lloyd,Autumn A. Cuellar,Poul M. F. Nielsen,Nickerson Ds +9 more
TL;DR: This document specifies CellML 1.1, an XML-based language for describing and exchanging models of cellular and subcellular processes, and MathML embedded in CellML documents is used to define the underlying mathematics of models.
Journal ArticleDOI
CellML 1.1 for the definition and exchange of biological models
TL;DR: CellML 1.1 has been developed to extend the component-based architecture of Cell ML 1.0 to facilitate model expansion and re-use and to support the increasingly complex systems in biology.