C
Carolina S. Carpenter
Researcher at University of California, San Diego
Publications - 17
Citations - 763
Carolina S. Carpenter is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Microbiome & Biology. The author has an hindex of 6, co-authored 12 publications receiving 298 citations. Previous affiliations of Carolina S. Carpenter include University of California, Berkeley & Scripps Institution of Oceanography.
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Journal ArticleDOI
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
Gregory D. Poore,Evguenia Kopylova,Qiyun Zhu,Carolina S. Carpenter,Serena Fraraccio,Stephen Wandro,Tomasz Kosciolek,Tomasz Kosciolek,Stefan Janssen,Stefan Janssen,Jessica L. Metcalf,Se Jin Song,Jad N. Kanbar,Sandrine Miller-Montgomery,Robert K. Heaton,Rana R. McKay,Sandip Pravin Patel,Austin D. Swafford,Rob Knight +18 more
TL;DR: Microbial nucleic acids are detected in samples of tissues and blood from more than 10,000 patients with cancer, and machine learning is used to show that these can be used to discriminate between and among different types of cancer, suggesting a new microbiome-based diagnostic approach.
Journal ArticleDOI
Mass spectrometry searches using MASST
Mingxun Wang,Alan K. Jarmusch,Fernando Vargas,Fernando Vargas,Alexander A. Aksenov,Julia M. Gauglitz,Kelly C. Weldon,Kelly C. Weldon,Daniel Petras,Ricardo Silva,Robert A. Quinn,Robert A. Quinn,Alexey V. Melnik,Justin J. J. van der Hooft,Justin J. J. van der Hooft,Andrés Mauricio Caraballo-Rodríguez,Louis-Félix Nothias,Christine M. Aceves,Morgan Panitchpakdi,Elizabeth Brown,Francesca Di Ottavio,Nicole Sikora,Emmanuel O. Elijah,Lara Labarta-Bajo,Emily C. Gentry,Shabnam Shalapour,Kathleen E. Kyle,Sara P. Puckett,Jeramie D. Watrous,Carolina S. Carpenter,Amina Bouslimani,Madeleine Ernst,Austin D. Swafford,Elina I. Zuniga,Marcy J. Balunas,Jonathan L. Klassen,Rohit Loomba,Rob Knight,Nuno Bandeira,Nuno Bandeira,Pieter C. Dorrestein +40 more
TL;DR: A webenabled mass spectrometry (MS) search engine, named Mass Spectrometry Search Tool (MASST), is introduced by enabling searches of all small-molecule tandem MS (MS/MS) data in public metabolomics repositories, it is proposed that MASST will unlock these resources for clinical, environmental and natural product applications.
Journal ArticleDOI
Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity.
Xin Fang,Yoshiki Vázquez-Baeza,Emmanuel O. Elijah,Fernando Vargas,Gail Ackermann,Gregory Humphrey,Rebecca Lau,Kelly C. Weldon,Jon G. Sanders,Jon G. Sanders,Morgan Panitchpakdi,Carolina S. Carpenter,Alan K. Jarmusch,Jennifer Neill,Ara Miralles,Parambir S. Dulai,Siddharth Singh,Matthew S. Tsai,Austin D. Swafford,Larry Smarr,David L. Boyle,Bernhard O. Palsson,Bernhard O. Palsson,John T. Chang,Pieter C. Dorrestein,William J. Sandborn,Rob Knight,Brigid S. Boland +27 more
TL;DR: Intestinal surgeries seem to reduce the diversity of the gut microbiome and metabolome in IBD patients, and these changes may persist and need to be studied in prospective longitudinal trials linked to microbiome-involved phenotypes.
Journal ArticleDOI
A 3000 year record of Caribbean reef urchin communities reveals causes and consequences of long‐term decline in Diadema antillarum
TL;DR: The detailed record of prehistorical and historical urchin community dynamics suggests that the failure of Diadema to recover over 30 yr after its mass mortality event may be due in part to the prey release of damselfish following the long-term overfishing of piscivorous fishes.
Posted ContentDOI
MASST: A Web-based Basic Mass Spectrometry Search Tool for Molecules to Search Public Data
Mingxun Wang,Alan K. Jarmusch,Fernando Vargas,Fernando Vargas,Alexander A. Aksenov,Julia Gauglitz,Kelly C. Weldon,Kelly C. Weldon,Daniel Petras,Silva Rd,Robert A. Quinn,Robert A. Quinn,Alexey V. Melnik,van der Hooft Jj,van der Hooft Jj,Caraballo Rodríguez Am,Louis-Félix Nothias,Christine M. Aceves,Morgan Panitchpakdi,Elizabeth Brown,Di Ottavio F,Nicole Sikora,Emmanuel O. Elijah,Lara Labarta-Bajo,Emily C. Gentry,Shabnam Shalapour,Kathleen E. Kyle,Sara P. Puckett,Jeramie D. Watrous,Carolina S. Carpenter,Amina Bouslimani,Madeleine Ernst,Austin D. Swafford,Elina I. Zuniga,Marcy J. Balunas,Jonathan L. Klassen,Rohit Loomba,Rob Knight,Nuno Bandeira,Nuno Bandeira,Pieter C. Dorrestein +40 more
TL;DR: A Mass Spectrometry Search Tool (MASST) is introduced, that enables the discovery of molecular relationships among accessible public metabolomics and natural product tandem mass spectrometry data (MS/MS).