J
Jeramie D. Watrous
Researcher at University of California, San Diego
Publications - 91
Citations - 6887
Jeramie D. Watrous is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Medicine & Internal medicine. The author has an hindex of 30, co-authored 72 publications receiving 4884 citations. Previous affiliations of Jeramie D. Watrous include University of California, Berkeley & University of California, Los Angeles.
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Journal ArticleDOI
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
Mingxun Wang,Jeremy Carver,Vanessa V. Phelan,Laura M. Sanchez,Neha Garg,Yao Peng,Don D. Nguyen,Jeramie D. Watrous,Clifford A. Kapono,Tal Luzzatto-Knaan,Carla Porto,Amina Bouslimani,Alexey V. Melnik,Michael J. Meehan,Wei-Ting Liu,Max Crüsemann,Paul D. Boudreau,Eduardo Esquenazi,Mario Sandoval-Calderón,Roland D. Kersten,Laura A. Pace,Robert A. Quinn,Katherine R. Duncan,Cheng-Chih Hsu,Dimitrios J. Floros,Ronnie G. Gavilan,Karin Kleigrewe,Trent R. Northen,Rachel J. Dutton,Delphine Parrot,Erin E. Carlson,Bertrand Aigle,Charlotte Frydenlund Michelsen,Lars Jelsbak,Christian Sohlenkamp,Pavel A. Pevzner,Anna Edlund,Anna Edlund,Jeffrey S. McLean,Jeffrey S. McLean,Jörn Piel,Brian T. Murphy,Lena Gerwick,Chih-Chuang Liaw,Yu-Liang Yang,Hans-Ulrich Humpf,Maria Maansson,Robert A. Keyzers,Amy C. Sims,Andrew R. Johnson,Ashley M. Sidebottom,Brian E. Sedio,Andreas Klitgaard,Charles B. Larson,Charles B. Larson,Cristopher A. Boya P.,Daniel Torres-Mendoza,David Gonzalez,Denise Brentan Silva,Denise Brentan Silva,Lucas Miranda Marques,Daniel P. Demarque,Egle Pociute,Ellis C. O’Neill,Enora Briand,Enora Briand,Eric J. N. Helfrich,Eve A. Granatosky,Evgenia Glukhov,Florian Ryffel,Hailey Houson,Hosein Mohimani,Jenan J. Kharbush,Yi Zeng,Julia A. Vorholt,Kenji L. Kurita,Pep Charusanti,Kerry L. McPhail,Kristian Fog Nielsen,Lisa Vuong,Maryam Elfeki,Matthew F. Traxler,Niclas Engene,Nobuhiro Koyama,Oliver B. Vining,Ralph S. Baric,Ricardo Pianta Rodrigues da Silva,Samantha J. Mascuch,Sophie Tomasi,Stefan Jenkins,Venkat R. Macherla,Thomas Hoffman,Vinayak Agarwal,Philip G. Williams,Jingqui Dai,Ram P. Neupane,Joshua R. Gurr,Andrés M. C. Rodríguez,Anne Lamsa,Chen Zhang,Kathleen Dorrestein,Brendan M. Duggan,Jehad Almaliti,Pierre-Marie Allard,Prasad Phapale,Louis-Félix Nothias,Theodore Alexandrov,Marc Litaudon,Jean-Luc Wolfender,Jennifer E. Kyle,Thomas O. Metz,Tyler Peryea,Dac-Trung Nguyen,Danielle VanLeer,Paul Shinn,Ajit Jadhav,Rolf Müller,Katrina M. Waters,Wenyuan Shi,Xueting Liu,Lixin Zhang,Rob Knight,Paul R. Jensen,Bernhard O. Palsson,Kit Pogliano,Roger G. Linington,Marcelino Gutiérrez,Norberto Peporine Lopes,William H. Gerwick,William H. Gerwick,Bradley S. Moore,Bradley S. Moore,Pieter C. Dorrestein,Pieter C. Dorrestein,Nuno Bandeira,Nuno Bandeira +135 more
TL;DR: In GNPS, crowdsourced curation of freely available community-wide reference MS libraries will underpin improved annotations and data-driven social-networking should facilitate identification of spectra and foster collaborations.
Journal ArticleDOI
Mass spectral molecular networking of living microbial colonies
Jeramie D. Watrous,Patrick J. Roach,Theodore Alexandrov,Theodore Alexandrov,Brandi S. Heath,Jane Y. Yang,Roland D. Kersten,Menno van der Voort,Kit Pogliano,Harald Gross,Jos M. Raaijmakers,Bradley S. Moore,Julia Laskin,Nuno Bandeira,Pieter C. Dorrestein +14 more
TL;DR: The platform presented here provides a significant advancement in the ability to understand the spatiotemporal dynamics of metabolite production in live microbial colonies and communities.
Journal ArticleDOI
Interspecies Interactions Stimulate Diversification of the Streptomyces coelicolor Secreted Metabolome
Matthew F. Traxler,Jeramie D. Watrous,Jeramie D. Watrous,Theodore Alexandrov,Theodore Alexandrov,Pieter C. Dorrestein,Roberto Kolter +6 more
TL;DR: The results illustrate that chemical interactions between actinomycete bacteria exhibit high complexity and specificity and can drive differential secondary metabolite production in pairwise coculture.
Journal ArticleDOI
Imaging mass spectrometry in microbiology.
TL;DR: The wide range of imaging mass spectrometry techniques that are available to microbiologists are explored and the unique applications of these tools to microbiology with respect to the types of samples to be investigated are described.
Journal ArticleDOI
MS/MS networking guided analysis of molecule and gene cluster families
Don D. Nguyen,Cheng-Hsuan Wu,Wilna J. Moree,Anne Lamsa,Marnix H. Medema,X. Zhao,Ronnie G. Gavilan,Marystella Aparicio,Librada A. Atencio,Chanaye Jackson,Javier Ballesteros,Joel Sanchez,Jeramie D. Watrous,Vanessa V. Phelan,Corine van de Wiel,Roland D. Kersten,Samina Mehnaz,René De Mot,Elizabeth A. Shank,Pep Charusanti,Harish Nagarajan,Brendan M. Duggan,Bradley S. Moore,Nuno Bandeira,Bernhard O. Palsson,Kit Pogliano,Marcelino Gutiérrez,Pieter C. Dorrestein +27 more
TL;DR: This paper matched the molecular families of peptide natural products produced by 42 bacilli and 18 pseudomonads through the generation of amino acid sequence tags from MS/MS data of specific clusters found in the MS/ MS network, providing the ability to link particular molecules with the genes that produced them.