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Robert A. Quinn
Researcher at Michigan State University
Publications - 82
Citations - 7963
Robert A. Quinn is an academic researcher from Michigan State University. The author has contributed to research in topics: Microbiome & Metabolome. The author has an hindex of 29, co-authored 75 publications receiving 5051 citations. Previous affiliations of Robert A. Quinn include University of California, San Diego & University of Louisiana at Lafayette.
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Journal ArticleDOI
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
Mingxun Wang,Jeremy Carver,Vanessa V. Phelan,Laura M. Sanchez,Neha Garg,Yao Peng,Don D. Nguyen,Jeramie D. Watrous,Clifford A. Kapono,Tal Luzzatto-Knaan,Carla Porto,Amina Bouslimani,Alexey V. Melnik,Michael J. Meehan,Wei-Ting Liu,Max Crüsemann,Paul D. Boudreau,Eduardo Esquenazi,Mario Sandoval-Calderón,Roland D. Kersten,Laura A. Pace,Robert A. Quinn,Katherine R. Duncan,Cheng-Chih Hsu,Dimitrios J. Floros,Ronnie G. Gavilan,Karin Kleigrewe,Trent R. Northen,Rachel J. Dutton,Delphine Parrot,Erin E. Carlson,Bertrand Aigle,Charlotte Frydenlund Michelsen,Lars Jelsbak,Christian Sohlenkamp,Pavel A. Pevzner,Anna Edlund,Anna Edlund,Jeffrey S. McLean,Jeffrey S. McLean,Jörn Piel,Brian T. Murphy,Lena Gerwick,Chih-Chuang Liaw,Yu-Liang Yang,Hans-Ulrich Humpf,Maria Maansson,Robert A. Keyzers,Amy C. Sims,Andrew R. Johnson,Ashley M. Sidebottom,Brian E. Sedio,Andreas Klitgaard,Charles B. Larson,Charles B. Larson,Cristopher A. Boya P.,Daniel Torres-Mendoza,David Gonzalez,Denise Brentan Silva,Denise Brentan Silva,Lucas Miranda Marques,Daniel P. Demarque,Egle Pociute,Ellis C. O’Neill,Enora Briand,Enora Briand,Eric J. N. Helfrich,Eve A. Granatosky,Evgenia Glukhov,Florian Ryffel,Hailey Houson,Hosein Mohimani,Jenan J. Kharbush,Yi Zeng,Julia A. Vorholt,Kenji L. Kurita,Pep Charusanti,Kerry L. McPhail,Kristian Fog Nielsen,Lisa Vuong,Maryam Elfeki,Matthew F. Traxler,Niclas Engene,Nobuhiro Koyama,Oliver B. Vining,Ralph S. Baric,Ricardo Pianta Rodrigues da Silva,Samantha J. Mascuch,Sophie Tomasi,Stefan Jenkins,Venkat R. Macherla,Thomas Hoffman,Vinayak Agarwal,Philip G. Williams,Jingqui Dai,Ram P. Neupane,Joshua R. Gurr,Andrés M. C. Rodríguez,Anne Lamsa,Chen Zhang,Kathleen Dorrestein,Brendan M. Duggan,Jehad Almaliti,Pierre-Marie Allard,Prasad Phapale,Louis-Félix Nothias,Theodore Alexandrov,Marc Litaudon,Jean-Luc Wolfender,Jennifer E. Kyle,Thomas O. Metz,Tyler Peryea,Dac-Trung Nguyen,Danielle VanLeer,Paul Shinn,Ajit Jadhav,Rolf Müller,Katrina M. Waters,Wenyuan Shi,Xueting Liu,Lixin Zhang,Rob Knight,Paul R. Jensen,Bernhard O. Palsson,Kit Pogliano,Roger G. Linington,Marcelino Gutiérrez,Norberto Peporine Lopes,William H. Gerwick,William H. Gerwick,Bradley S. Moore,Bradley S. Moore,Pieter C. Dorrestein,Pieter C. Dorrestein,Nuno Bandeira,Nuno Bandeira +135 more
TL;DR: In GNPS, crowdsourced curation of freely available community-wide reference MS libraries will underpin improved annotations and data-driven social-networking should facilitate identification of spectra and foster collaborations.
Journal ArticleDOI
Best practices for analysing microbiomes.
Rob Knight,Alison Vrbanac,Bryn C. Taylor,Alexander A. Aksenov,Chris Callewaert,Chris Callewaert,Justine W. Debelius,Antonio Gonzalez,Tomasz Kosciolek,Laura-Isobel McCall,Daniel McDonald,Alexey V. Melnik,James T. Morton,Jose Navas,Robert A. Quinn,Jon G. Sanders,Austin D. Swafford,Luke R. Thompson,Luke R. Thompson,Anupriya Tripathi,Zhenjiang Zech Xu,Jesse R. Zaneveld,Qiyun Zhu,J. Gregory Caporaso,Pieter C. Dorrestein,Pieter C. Dorrestein +25 more
TL;DR: This Review focuses on recent findings that suggest that operational taxonomic unit-based analyses should be replaced with new methods that are based on exact sequence variants, methods for integrating metagenomic and metabolomic data, and issues surrounding compositional data analysis.
Journal ArticleDOI
Microbiome-wide association studies link dynamic microbial consortia to disease
Jack A. Gilbert,Robert A. Quinn,Justine W. Debelius,Zhenjiang Zech Xu,James T. Morton,Neha Garg,Neha Garg,Janet K. Jansson,Pieter C. Dorrestein,Rob Knight +9 more
TL;DR: An appreciation of the complexity of interactions among the microbiome and the host's diet, chemistry and health, as well as determining the frequency of observations that are needed to capture and integrate this dynamic interface, is paramount for developing precision diagnostics and therapies based on the microbiome.
Journal ArticleDOI
Feature-based molecular networking in the GNPS analysis environment.
Louis-Félix Nothias,Louis-Félix Nothias,Daniel Petras,Daniel Petras,Robin Schmid,Kai Dührkop,Johannes Rainer,Abinesh Sarvepalli,Abinesh Sarvepalli,Ivan Protsyuk,Madeleine Ernst,Madeleine Ernst,Madeleine Ernst,Hiroshi Tsugawa,Markus Fleischauer,Fabian Aicheler,Alexander A. Aksenov,Alexander A. Aksenov,Oliver Alka,Pierre-Marie Allard,Aiko Barsch,Xavier Cachet,Andrés Mauricio Caraballo-Rodríguez,Andrés Mauricio Caraballo-Rodríguez,Ricardo Silva,Ricardo Silva,Tam Dang,Tam Dang,Neha Garg,Julia M. Gauglitz,Julia M. Gauglitz,Alexey Gurevich,Giorgis Isaac,Alan K. Jarmusch,Alan K. Jarmusch,Zdeněk Kameník,Kyo Bin Kang,Kyo Bin Kang,Kyo Bin Kang,Nikolas Kessler,Irina Koester,Irina Koester,Ansgar Korf,Audrey Le Gouellec,Marcus Ludwig,Christian Martin H,Laura-Isobel McCall,Jonathan McSayles,Sven W. Meyer,Hosein Mohimani,Mustafa Morsy,Oriane Moyne,Oriane Moyne,Steffen Neumann,Heiko Neuweger,Ngoc Hung Nguyen,Ngoc Hung Nguyen,Mélissa Nothias-Esposito,Mélissa Nothias-Esposito,Julien Paolini,Vanessa V. Phelan,Tomáš Pluskal,Robert A. Quinn,Simon Rogers,Bindesh Shrestha,Anupriya Tripathi,Anupriya Tripathi,Justin J. J. van der Hooft,Justin J. J. van der Hooft,Justin J. J. van der Hooft,Fernando Vargas,Fernando Vargas,Kelly C. Weldon,Kelly C. Weldon,Michael Witting,Heejung Yang,Zheng Zhang,Zheng Zhang,Florian Zubeil,Oliver Kohlbacher,Sebastian Böcker,Theodore Alexandrov,Theodore Alexandrov,Nuno Bandeira,Nuno Bandeira,Mingxun Wang,Mingxun Wang,Pieter C. Dorrestein +87 more
TL;DR: Feature-based molecular networking (FBMN) as discussed by the authors is an analysis method in the Global Natural Products Social Molecular Networking (GNPS) infrastructure that builds on chromatographic feature detection and alignment tools.
Journal ArticleDOI
Illuminating the dark matter in metabolomics
TL;DR: The development of a computational tool designed to aid in the annotation of chemistries that can be observed by mass spectrometry, called CSI:FingerID, is described, which uses fragmentation trees to connect tandem MS/MS data to chemical structures found in public chemistry databases.